View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9668_low_10 (Length: 250)

Name: NF9668_low_10
Description: NF9668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9668_low_10
NF9668_low_10
[»] chr8 (2 HSPs)
chr8 (34-235)||(8863672-8863872)
chr8 (45-73)||(28307572-28307600)
[»] chr7 (1 HSPs)
chr7 (45-149)||(28617283-28617384)
[»] scaffold0076 (1 HSPs)
scaffold0076 (56-182)||(16057-16181)
[»] chr4 (3 HSPs)
chr4 (63-184)||(37781766-37781883)
chr4 (35-81)||(34670710-34670756)
chr4 (112-157)||(873638-873683)
[»] chr5 (2 HSPs)
chr5 (75-178)||(5611052-5611151)
chr5 (112-184)||(34842507-34842579)
[»] chr3 (3 HSPs)
chr3 (75-178)||(21156339-21156438)
chr3 (56-99)||(29100144-29100187)
chr3 (112-157)||(44658592-44658637)
[»] chr6 (1 HSPs)
chr6 (113-184)||(33721682-33721753)
[»] chr2 (3 HSPs)
chr2 (46-193)||(16388529-16388673)
chr2 (46-92)||(2869752-2869798)
chr2 (48-184)||(3277906-3278038)
[»] chr1 (2 HSPs)
chr1 (46-96)||(10996948-10996998)
chr1 (44-96)||(35109593-35109645)


Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 34 - 235
Target Start/End: Original strand, 8863672 - 8863872
Alignment:
Q  34 actatctccatcagagtaggtcattttggaccgaactgggaaaacaatattgatgtgttgttttctcccatccat--tcattcttatatttgttgctttg 131  Q
    ||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||  | |||||||||||||||||||||    
T  8863672 actatttccatcagagtaggttattttgaaccgaactgggaaaacaatattgatgtgttgttttctctcatccatatttattcttatatttgttgctttg 8863771  T
Q  132 aatatatttgtggtgttgtttcacacataggtgtaggtttctttgttgttgttactgatgctgctgcttgaaactattttattcattaattagcacttcc 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||| |||||||||||||||||||||||    
T  8863772 aatatatttgtggtgttgtttcacacataggtgtaggtttctttgttgttgttac---tgctgctgcttgaaactactttattcattaattagcacttcc 8863868  T
Q  232 tttg 235  Q
    ||||    
T  8863869 tttg 8863872  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 73
Target Start/End: Complemental strand, 28307600 - 28307572
Alignment:
Q  45 cagagtaggtcattttggaccgaactggg 73  Q
    |||||||||||||||||||||||||||||    
T  28307600 cagagtaggtcattttggaccgaactggg 28307572  T

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Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 45 - 149
Target Start/End: Original strand, 28617283 - 28617384
Alignment:
Q  45 cagagtaggtcattttggaccgaactgggaaaacaatattgatgtg-ttgttttctcccatccattcattcttatatttgttgctttgaatatatttgtg 143  Q
    ||||||||||||| ||||||||||||||| ||||||||||| |||| |||||||||    ||| ||| | ||||| |||||||||||||||||  |||||    
T  28617283 cagagtaggtcatattggaccgaactgggtaaacaatattggtgtgtttgttttct----tcctttcttgcttatctttgttgctttgaatatgcttgtg 28617378  T
Q  144 gtgttg 149  Q
    ||||||    
T  28617379 gtgttg 28617384  T

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Target: scaffold0076 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 56 - 182
Target Start/End: Original strand, 16057 - 16181
Alignment:
Q  56 attttggaccgaactgggaaaacaatattgatgtgttgttttctcccatccattcattctt-atatttgttgctttgaatatatttgtggtgttgtttca 154  Q
    |||||||||||||||||| ||| ||||||| |||||||||||    | ||| |||  |||| || ||||||||||||||||| |||||||||||||||||    
T  16057 attttggaccgaactgggtaaataatattggtgtgttgttttt---cttcctttctctctttatctttgttgctttgaatatgtttgtggtgttgtttca 16153  T
Q  155 cacataggtgtaggtttctttgttgttg 182  Q
    ||| ||| | |||||   ||||||||||    
T  16154 cacttagatctaggtaaatttgttgttg 16181  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 184
Target Start/End: Complemental strand, 37781883 - 37781766
Alignment:
Q  63 accgaactgggaaaacaatattgatgtgttgttttctcccatccattcattcttatatttgttgctttgaatatatttgtggtgttgtttcacacatagg 162  Q
    ||||||||||| ||||||||||| | |||||||||||    || |||  ||||||| |||||||||||||||||  ||||||||||| ||||||| |||     
T  37781883 accgaactgggtaaacaatattggtttgttgttttct----tctattatttcttatctttgttgctttgaatatgcttgtggtgttgcttcacacttaga 37781788  T
Q  163 tgtaggtttctttgttgttgtt 184  Q
    | ||||| | ||||||| ||||    
T  37781787 tctaggtctatttgttgatgtt 37781766  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 34670710 - 34670756
Alignment:
Q  35 ctatctccatcagagtaggtcattttggaccgaactgggaaaacaat 81  Q
    |||||||| ||| |||||||||||||||||||||||||  |||||||    
T  34670710 ctatctccttcatagtaggtcattttggaccgaactggataaacaat 34670756  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 157
Target Start/End: Original strand, 873638 - 873683
Alignment:
Q  112 ttcttatatttgttgctttgaatatatttgtggtgttgtttcacac 157  Q
    ||||||| || |||| ||||||||| ||||||||||||||||||||    
T  873638 ttcttatcttcgttgttttgaatatgtttgtggtgttgtttcacac 873683  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 178
Target Start/End: Complemental strand, 5611151 - 5611052
Alignment:
Q  75 aaacaatattgatgtgttgttttctcccatccattcattcttatatttgttgctttgaatatatttgtggtgttgtttcacacataggtgtaggtttctt 174  Q
    ||||||||||| |||||||||||||    ||| ||| ||||||| |||||||||||||||||  || |||||||||||||| | ||| | ||||||| ||    
T  5611151 aaacaatattggtgtgttgttttct----tcccttctttcttatctttgttgctttgaatattcttatggtgttgtttcactcttagatctaggtttgtt 5611056  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 184
Target Start/End: Complemental strand, 34842579 - 34842507
Alignment:
Q  112 ttcttatatttgttgctttgaatatatttgtggtgttgtttcacacataggtgtaggtttctttgttgttgtt 184  Q
    ||||||| |||||||||| | ||||  ||||||||||| ||||||| ||| | ||||||| ||| ||||||||    
T  34842579 ttcttatctttgttgcttcggatatgcttgtggtgttgcttcacacttagatctaggtttgtttattgttgtt 34842507  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 178
Target Start/End: Complemental strand, 21156438 - 21156339
Alignment:
Q  75 aaacaatattgatgtgttgttttctcccatccattcattcttatatttgttgctttgaatatatttgtggtgttgtttcacacataggtgtaggtttctt 174  Q
    ||||||||||| |||||||||||||    ||| ||| ||||||| |||||||||||||||||  || |||||||||||||| | ||| | ||||||| ||    
T  21156438 aaacaatattggtgtgttgttttct----tcccttctttcttatctttgttgctttgaatattcttatggtgttgtttcactcttagatctaggtttgtt 21156343  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 99
Target Start/End: Complemental strand, 29100187 - 29100144
Alignment:
Q  56 attttggaccgaactgggaaaacaatattgatgtgttgttttct 99  Q
    |||||||||||||||||| ||||||||||| |||||||||||||    
T  29100187 attttggaccgaactgggtaaacaatattggtgtgttgttttct 29100144  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 157
Target Start/End: Original strand, 44658592 - 44658637
Alignment:
Q  112 ttcttatatttgttgctttgaatatatttgtggtgttgtttcacac 157  Q
    ||||||| ||||||| ||||  ||||||||||||||||||||||||    
T  44658592 ttcttatctttgttgttttggttatatttgtggtgttgtttcacac 44658637  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 33721682 - 33721753
Alignment:
Q  113 tcttatatttgttgctttgaatatatttgtggtgttgtttcacacataggtgtaggtttctttgttgttgtt 184  Q
    |||||| ||||||||||||||||| ||||||||| |||||||||| ||| | ||||  | ||||||||||||    
T  33721682 tcttatctttgttgctttgaatatgtttgtggtgatgtttcacacttagatctagggatgtttgttgttgtt 33721753  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 193
Target Start/End: Original strand, 16388529 - 16388673
Alignment:
Q  46 agagtaggtcatttt-ggaccgaactgggaaaacaatattgatgtgttgttttctcccatccattcattcttatatttgttgctttgaatatatttgtgg 144  Q
    ||||||||||||||| ||||| ||||||| ||||||||||| |||||||||||    | ||| |||  |||||| ||| |||||||| ||||  || | |    
T  16388529 agagtaggtcatttttggaccaaactgggtaaacaatattggtgtgttgtttt----cctcctttctctcttatctttattgctttggatatgcttatag 16388624  T
Q  145 tgttgtttcacacataggtgtaggtttctttgttgttgttactgatgct 193  Q
    ||||| ||||||||||  | ||||| | |||||||||||| ||| ||||    
T  16388625 tgttgcttcacacatacatctaggtctgtttgttgttgttgctgctgct 16388673  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 2869752 - 2869798
Alignment:
Q  46 agagtaggtcattttggaccgaactgggaaaacaatattgatgtgtt 92  Q
    |||||||||||| ||||||||||||||| ||||||||||| ||||||    
T  2869752 agagtaggtcatattggaccgaactgggtaaacaatattggtgtgtt 2869798  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 184
Target Start/End: Complemental strand, 3278038 - 3277906
Alignment:
Q  48 agtaggtcattttggaccgaactgggaaaacaatattgatgtgttgttttctcccatccattcattcttatatttgttgctttgaatatatttgtggtgt 147  Q
    ||||||||||||||||| ||| || | ||||||| |||||||||| |||    || ||  ||  ||||||| ||| ||||||||||||| ||||| ||||    
T  3278038 agtaggtcattttggacggaaatgagtaaacaatgttgatgtgtttttt----ccctctcttatttcttatcttttttgctttgaatatgtttgtagtgt 3277943  T
Q  148 tgtttcacacataggtgtaggtttctttgttgttgtt 184  Q
    || ||||||| ||| | ||| | | ||||||||||||    
T  3277942 tgcttcacacttagatctagatctatttgttgttgtt 3277906  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 10996998 - 10996948
Alignment:
Q  46 agagtaggtcattttggaccgaactgggaaaacaatattgatgtgttgttt 96  Q
    ||||||||||||| |  ||||||||||| ||||||||||| ||||||||||    
T  10996998 agagtaggtcattctaaaccgaactgggtaaacaatattggtgtgttgttt 10996948  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 35109593 - 35109645
Alignment:
Q  44 tcagagtaggtcattttggaccgaactgggaaaacaatattgatgtgttgttt 96  Q
    ||||| |||||||||||||||| ||||| | ||||||||| | ||||||||||    
T  35109593 tcagattaggtcattttggaccaaactgagtaaacaatatcggtgtgttgttt 35109645  T

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