View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9668_low_15 (Length: 209)
Name: NF9668_low_15
Description: NF9668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9668_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 13696272 - 13696211
Alignment:
| Q |
15 |
cataggtggaagaaaatgcaggtgtaaataccattcgtaagaaatatcataaacttggtatg |
76 |
Q |
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| T |
13696272 |
cataggtggaagaaaatgcaggtgtaaataccattcggaagaaatatcataaacttggtatg |
13696211 |
T |
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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 193
Target Start/End: Complemental strand, 13696127 - 13696095
Alignment:
| Q |
161 |
cagccttgcaacttcatccagataagaataaac |
193 |
Q |
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| T |
13696127 |
cagccttgcaacttcatccagataagaataaac |
13696095 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 49928456 - 49928514
Alignment:
| Q |
16 |
ataggtggaagaaaatgcaggtgtaaataccattcgtaagaaatatcataaacttggta |
74 |
Q |
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| T |
49928456 |
ataggtagaagaaaatgcaggagtaaataccatacgcaaaagataccataaacttggta |
49928514 |
T |
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