View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9668_low_2 (Length: 330)
Name: NF9668_low_2
Description: NF9668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9668_low_2 |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 64; Significance: 6e-28; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 31045551 - 31045665
Alignment:
| Q |
11 |
gaaacttgaatgaatcatcttactagagagaacatgtgagacacttatgcctgtatataacaactatttgaatcagaa--ttctgatttatatatgaata |
108 |
Q |
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| T |
31045551 |
gaaacttgaatgaatcatcttactagagagatcatgtgcgacacctatccctatatatagtaactatttgaaccaaaattttctgatttatatatgaata |
31045650 |
T |
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| Q |
109 |
ttttgacaattcata |
123 |
Q |
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||| ||||||||||| |
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| T |
31045651 |
tttcgacaattcata |
31045665 |
T |
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Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 31056620 - 31056679
Alignment:
| Q |
11 |
gaaacttgaatgaatcatcttactagagagaacatgtgagacacttatgcctgtatataa |
70 |
Q |
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| T |
31056620 |
gaaacttaaatgaataatcttatcagagagaacatgtgagacacttatgcctgtatataa |
31056679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 31096523 - 31096480
Alignment:
| Q |
15 |
cttgaatgaatcatcttactagagagaacatgtgagacacttat |
58 |
Q |
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| T |
31096523 |
cttgaatgaatcatctttgtagagagaacatgtgagatacttat |
31096480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 41
Target Start/End: Original strand, 31035350 - 31035379
Alignment:
| Q |
12 |
aaacttgaatgaatcatcttactagagaga |
41 |
Q |
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| T |
31035350 |
aaacttgaatgaatcatcttactagagaga |
31035379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 31069843 - 31069879
Alignment:
| Q |
278 |
tgaaataaatgtgtgtgtgagagataaaccttcctga |
314 |
Q |
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| T |
31069843 |
tgaaattaatgtgtgtgtgagagatagaccttcctga |
31069879 |
T |
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Target: scaffold0202 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 5239 - 5180
Alignment:
| Q |
11 |
gaaacttgaatgaatcatcttactagagagaacatgtgagacacttatgcctgtatataa |
70 |
Q |
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||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||| |
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| T |
5239 |
gaaacttgaatgaatcatctttgtagagagaacacatgagacacttatgcctatatataa |
5180 |
T |
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