View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9669_high_12 (Length: 311)
Name: NF9669_high_12
Description: NF9669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9669_high_12 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 13 - 295
Target Start/End: Original strand, 26258508 - 26258790
Alignment:
| Q |
13 |
cagagacagttaacttttcaatcatgttggtttacaaggatctccttaccggtgatgagcttctatcagactcttacccgtacaaggaaattgataatgg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26258508 |
cagagacagttaacttttcaatcatgttggtttacaaggatctccttatcggtgatgagcttctatcagactcttacccgtacaaggaaattgataatgg |
26258607 |
T |
|
| Q |
113 |
aatgttgtcggaagttgagggaaagtgggttgttaggggagcatgtgatgtagacattggtgctaacccttatgctgaaggtggagaagatgagggtgtt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26258608 |
aatgttgtcggaagttgagggaaagtgggttgttaggggagcatgtgatgtagacattggtgctaacccttatgctgaaggtggagaagatgagggtgtt |
26258707 |
T |
|
| Q |
213 |
gatgactcaactgctaaggttgtcgacattgttaacatattcagacttcaggaacaactttcttttaacaagaagtagtttct |
295 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||| ||||| |||||||| ||||||| |
|
|
| T |
26258708 |
gatgactcaactgctaaggttgttgacattgttgacgtattcagacttcaggaacaacttgcttttgacaagaagcagtttct |
26258790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 136 - 264
Target Start/End: Original strand, 14245942 - 14246070
Alignment:
| Q |
136 |
agtgggttgttaggggagcatgtgatgtagacattggtgctaacccttatgctgaaggtggagaagatgagggtgttgatgactcaactgctaaggttgt |
235 |
Q |
| |
|
|||||||||||| ||||| ||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
14245942 |
agtgggttgttaagggagttgttgaagtagacattggtgctaacgcttcagctgaaggtggagaagatgagggtgttgatgactcagctgtcaaggttgt |
14246041 |
T |
|
| Q |
236 |
cgacattgttaacatattcagacttcagg |
264 |
Q |
| |
|
|||||||||| || ||||||||||||||| |
|
|
| T |
14246042 |
cgacattgttgacgtattcagacttcagg |
14246070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 63 - 137
Target Start/End: Original strand, 14245774 - 14245848
Alignment:
| Q |
63 |
ggtgatgagcttctatcagactcttacccgtacaaggaaattgataatggaatgttgtcggaagttgagggaaag |
137 |
Q |
| |
|
|||||||||||| | |||||||||||||| |||||||||||||| ||||||||||||| ||| |||||||||||| |
|
|
| T |
14245774 |
ggtgatgagcttttgtcagactcttacccatacaaggaaattgagaatggaatgttgtgggaggttgagggaaag |
14245848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 14244848 - 14244900
Alignment:
| Q |
13 |
cagagacagttaacttttcaatcatgttggtttacaaggatctccttaccggt |
65 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
14244848 |
cagagacagttaactcttcaatcatgttggtttaccaggatctccttaccggt |
14244900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University