View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9669_high_2 (Length: 646)
Name: NF9669_high_2
Description: NF9669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9669_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 584; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 13 - 633
Target Start/End: Original strand, 32834561 - 32835185
Alignment:
| Q |
13 |
agcacagaaaccgaaccaggatccaccgcatcaagatagagagaagacgttcctctggggcatcactgtcgccctagtcatttcccaaatctttacactg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32834561 |
agcacagaaaccgaaccaggatccaccgcatcaagatagagagaagacgttcctctggggcatcactgtcgccctagtcatttcccaaatctttacactg |
32834660 |
T |
|
| Q |
113 |
gtatgcttct----ttctttctttctttgatttatttatctttgtacttgtgaatataaataaatattcctaaagaaagataatggtgttggtatcgaat |
208 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32834661 |
gtatgcttctttctttctttctttctttgatttatttatctttgtacttgtgaatataaataaattttcctaaagaaagataatggtgttggtatcgaat |
32834760 |
T |
|
| Q |
209 |
gtatttgtctgtgtagttagtatcttatcatatgcatggaatctatatatgttccttaattcatttttatacatgccttggatttttactatgaccgggg |
308 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32834761 |
gtatttgtctgtgtagttagtatcttatcatatgcatggaatctatgtatgttccttaattcatttttatacatgccttggatttttactatgaccgggg |
32834860 |
T |
|
| Q |
309 |
tttcaactttcaagatttatatgtattgagtttttggaatatcactagaatttatttcaattgaattatgtagaaagttttccatttcttttgttgatgg |
408 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32834861 |
tttcaattttcaagatttatatgtattgagtttttggaatatcactagaatttatttcaattgaattatgtagaaagttttccaattcttttgttgatgg |
32834960 |
T |
|
| Q |
409 |
atactggtagtatatgtccttaattctgtgtgtttcatggctcaagaaaaaattaatcttcaatttcattatgtgacgttctgagaattaattttgatac |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32834961 |
atactggtagtatatgtccttaattctgtgtgtttcatggcttaagaaaaaattaatcttcaatttcattatgtgacgttctgagaattagttttgatac |
32835060 |
T |
|
| Q |
509 |
caaaatatactagaaaattttatttaaatttgttcacgtgtatatgtatctaattcgttgtgtttctgtgagttcgaaaaaattatgcttcaatttatct |
608 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32835061 |
caaaatatactagaaaattttatttaaatttgttcacgtgtatatgtatctaattcgttgtgtttctgtgagttcgaaaaaattatgcttcaatttatct |
32835160 |
T |
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| Q |
609 |
ttatgacaaacttcgtttgattttg |
633 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
32835161 |
ttatgacaaacttcgtttgattttg |
32835185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 17 - 434
Target Start/End: Original strand, 32840943 - 32841365
Alignment:
| Q |
17 |
cagaaaccgaaccaggatccaccgcatcaagatagagagaagacgttcctctggggcatcactgtcgccctagtcatttcccaaatctttacactggtat |
116 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||| |||||||||||| |
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| T |
32840943 |
cagaaaccgaaccaggctccaccgcagcaagatagagagaagacgttcctcaggggcatcacagtcgccttagtcatttcccaaatccttacactggtat |
32841042 |
T |
|
| Q |
117 |
gcttctttctttctttc-----tttgatttatttatctttgtacttgtgaatataaataaatattcctaaagaaagataatggtgttggtatcgaatgta |
211 |
Q |
| |
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| |||||||||||||| |||||||||||||||||||||| |||||||||||||||| | |||| |||||||||||| |||||||||| ||||||| |
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| T |
32841043 |
gtgtctttctttctttcattcttttgatttatttatctttgtacgtgtgaatataaataaagactcctcaagaaagataattgtgttggtattgaatgta |
32841142 |
T |
|
| Q |
212 |
tttgtctgtgtagttagtatcttatcatatgcatggaatctatatatgttccttaattcatttttatacatgccttggatttttactatgaccggggttt |
311 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32841143 |
tttgtctgcgtagttagtatcttattgtatgcatgcaatctatatatgctcctcaattcatttttatacatgccttggatttttactatgaccagggttt |
32841242 |
T |
|
| Q |
312 |
caactttcaagatttatatgtattgagtttttggaatatcactagaatttatttcaattgaattatgtagaaagttttccatttcttttgttgatggata |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32841243 |
caactttcaagatttatatgtattgagtttttggaatatcacaagaatttatttcaattgaattatgtagaaagttttccatttcatttgttgatggata |
32841342 |
T |
|
| Q |
412 |
ctggtagtatatgtccttaattc |
434 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
32841343 |
ctggtagtatatgtccttaattc |
32841365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 472 - 630
Target Start/End: Original strand, 32841372 - 32841530
Alignment:
| Q |
472 |
tttcattatgtgacgttctgagaattaattttgataccaaaatatactagaaaattttatttaaatttgttcacgtgtatatgtatctaattcgttgtgt |
571 |
Q |
| |
|
||||| ||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||| |
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| T |
32841372 |
tttcaatatgtgatgttctgataattaatttcgataccaaaatatactagaaaattttatttaaatttgttcatgtgtatgtgtatctaattcgtcgtgt |
32841471 |
T |
|
| Q |
572 |
ttctgtgagttcgaaaaaattatgcttcaatttatctttatgacaaacttcgtttgatt |
630 |
Q |
| |
|
|||| |||||||||||| || |||||||||||||||||||||||| ||| |||||||| |
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| T |
32841472 |
ttctatgagttcgaaaattttttgcttcaatttatctttatgacaatcttggtttgatt |
32841530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 227 - 303
Target Start/End: Complemental strand, 31661789 - 31661713
Alignment:
| Q |
227 |
agtatcttatcatatgcatggaatctatatatgttccttaattcatttttatacatgccttggatttttactatgac |
303 |
Q |
| |
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||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
31661789 |
agtatcttatcatgtgcatgcaatctatatatgttcctcaattcatttttatacatgccttggattttcactatgac |
31661713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 227 - 303
Target Start/End: Complemental strand, 31683255 - 31683179
Alignment:
| Q |
227 |
agtatcttatcatatgcatggaatctatatatgttccttaattcatttttatacatgccttggatttttactatgac |
303 |
Q |
| |
|
||||||||||||| |||||| |||||||| |||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
31683255 |
agtatcttatcatgtgcatgcaatctatacatgttcctcaattcatttttatacatgccttggattttcactatgac |
31683179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 330 - 413
Target Start/End: Complemental strand, 31661710 - 31661627
Alignment:
| Q |
330 |
tgtattgagtttttggaatatcactagaatttatttcaattgaattatgtagaaagttttccatttcttttgttgatggatact |
413 |
Q |
| |
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||||||||||||||| |||||||| ||||||||||||||||||| | ||||||||| ||||||| |||||||||||||||| |
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| T |
31661710 |
tgtattgagtttttgaaatatcacaagaatttatttcaattgaagggtttagaaagttgtccattttatttgttgatggatact |
31661627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 330 - 413
Target Start/End: Complemental strand, 31683176 - 31683093
Alignment:
| Q |
330 |
tgtattgagtttttggaatatcactagaatttatttcaattgaattatgtagaaagttttccatttcttttgttgatggatact |
413 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||| | ||||||||| ||||||| |||||||||||||||| |
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| T |
31683176 |
tgtattgagtttttgaaatatcacaagaatttatttcaattgaagggtttagaaagttgtccattttatttgttgatggatact |
31683093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 3e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 271 - 539
Target Start/End: Original strand, 7479345 - 7479615
Alignment:
| Q |
271 |
atttttatacatgccttggatttttactatgaccggggtttcaactttcaagatttatatgtattgagtttttggaatatcactagaatttatttcaatt |
370 |
Q |
| |
|
||||||||| |||||||||||||||||||||| | | |||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
7479345 |
atttttatatttgccttggatttttactatgacagag-tttcaactttcaagatatatatgtattgagtttttggaatttcacaagaatttatttcaatt |
7479443 |
T |
|
| Q |
371 |
gaattatgtagaaagttttccatttcttttgttga--tggatactggtagta-tatgtccttaattctgtgtgtttcatggctcaagaaaaaa-ttaatc |
466 |
Q |
| |
|
||||||||||||||||||| ||| | |||||||| ||||| || |||||| |||||||||||||| | || ||||| || ||||||||| |||||| |
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|
| T |
7479444 |
gaattatgtagaaagtttttcatataatttgttgatgtggat-ctagtagtattatgtccttaattcactatgcttcattacttaagaaaaaagttaatc |
7479542 |
T |
|
| Q |
467 |
ttcaatttcattatgtgacgttctgagaattaattttgataccaaaatatactagaaaattttatttaaattt |
539 |
Q |
| |
|
|| ||| ||||||||||| ||||||||||||||||| ||||||||||| || ||| ||||||||||| ||||| |
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| T |
7479543 |
ttaaatctcattatgtgatgttctgagaattaatttcgataccaaaatgtagtagcaaattttatttcaattt |
7479615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 453 - 498
Target Start/End: Original strand, 7479643 - 7479688
Alignment:
| Q |
453 |
agaaaaaattaatcttcaatttcattatgtgacgttctgagaatta |
498 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
7479643 |
agaaaaaattaattttcaatttcattatgtgacgttctgagaatta |
7479688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 517 - 615
Target Start/End: Complemental strand, 28403497 - 28403402
Alignment:
| Q |
517 |
actagaaaattttatttaaatttgttcacgtgtatatgtatctaattcgttgtgtttctgtgagttcgaaaaaattatgcttcaatttatctttatgac |
615 |
Q |
| |
|
||||||||||||||||||| |||||||| ||| ||||||| |||||| |||||||||| |||||| ||||||||||||||||||||| |||||||||| |
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|
| T |
28403497 |
actagaaaattttatttaa-tttgttca-gtgcatatgtacataattcattgtgtttctatgagttagaaaaaattatgcttcaattt-tctttatgac |
28403402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 551 - 614
Target Start/End: Complemental strand, 19375330 - 19375268
Alignment:
| Q |
551 |
tatgtatctaattcgttgtgtttctgtgagttcgaaaaaattatgcttcaatttatctttatga |
614 |
Q |
| |
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|||||| ||||||| |||||||||| ||| || ||||||||||||||||||||| ||||||||| |
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| T |
19375330 |
tatgtacctaattcattgtgtttctatgatttagaaaaaattatgcttcaattt-tctttatga |
19375268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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