View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9669_high_6 (Length: 451)

Name: NF9669_high_6
Description: NF9669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9669_high_6
NF9669_high_6
[»] chr2 (2 HSPs)
chr2 (19-451)||(39289115-39289547)
chr2 (19-451)||(39295998-39296427)


Alignment Details
Target: chr2 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 19 - 451
Target Start/End: Complemental strand, 39289547 - 39289115
Alignment:
Q  19 tgaataaccatagaaggataagagctaaccaaccggaaaaacggtggattcgctcgaaaacattgtggtggagatgtcgaataactggaaaagctgcgag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  39289547 tgaataaccatagaaggataagagctaaccaaccggaaaaacggtggattcgctcgaaaacattgtggtggagatgtcgaataactggaaaagctgcaag 39289448  T
Q  119 cgaagagagtgtaatgagtgagaggatggcgaatgcaacaccgagtatctccggagaagaattggttttgtcgttgcttttgatcgtgagtacgagagaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39289447 cgaagagagtgtaatgagtgagaggatggcgaatgcaacaccgagtatctccggagaagaattggttttgtcgttgcttttgatcgtgagtacgagagaa 39289348  T
Q  219 taaactagccatgctatcgaagaaacgccgcagccactatgaattcctccaagactctgaagaaatgaagttattgctgttttgattctaagagaaacac 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||    
T  39289347 taaactagccatgctatcgaagaaacgccgcagccactatgaattcctccaatacattgaagaaatgaagttattgctgttttgattctaagagaaacac 39289248  T
Q  319 aaggcttccctatagttttgacaacaaaccagtaaagaagtcttaaaaccgcctcacttcgacatagtgttaaagctagaatgttaccaatggagaaaag 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39289247 aaggcttccctatagttttgacaacaaaccagtaaagaagtcttaaaaccgcctcacttcgacatagtgttaaagctagaatgttaccaatggagaaaag 39289148  T
Q  419 tgtagctcttgatttaccatatggaaaatgccc 451  Q
    |||||||||||||||||||||||||||||||||    
T  39289147 tgtagctcttgatttaccatatggaaaatgccc 39289115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 19 - 451
Target Start/End: Complemental strand, 39296427 - 39295998
Alignment:
Q  19 tgaataaccatagaaggataagagctaaccaaccggaaaaacggtggattcgctcgaaaacattgtggtggagatgtcgaataactggaaaagctgcgag 118  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||| ||||| |||||||  |||||||||| |||    
T  39296427 tgaaaaaccatagaaggataagagctaaccaaccggcaaaacggtggattcgctcaaaaacgttgtggtgaagatgacgaataaaaggaaaagctgagag 39296328  T
Q  119 cgaagagagtgtaatgagtgagaggatggcgaatgcaacaccgagtatctccggagaagaattggttttgtcgttgcttttgatcgtgagtacgagagaa 218  Q
    ||||| |||||||| ||| ||||| |||||||||||||| ||||| ||||| |||||||   || |||  |||||| || |||||||||| |||||||||    
T  39296327 cgaagtgagtgtaaggagcgagagaatggcgaatgcaacgccgagaatctctggagaag---tgttttcatcgttgtttgtgatcgtgagaacgagagaa 39296231  T
Q  219 taaactagccatgctatcgaagaaacgccgcagccactatgaattcctccaagactctgaagaaatgaagttattgctgttttgattctaagagaaacac 318  Q
    || |||||||||||||| |||||||| ||||||||||||||||||||||||| ||  ||||| |||||||||||||||||||||||||||||||||||||    
T  39296230 tatactagccatgctattgaagaaacaccgcagccactatgaattcctccaatacattgaaggaatgaagttattgctgttttgattctaagagaaacac 39296131  T
Q  319 aaggcttccctatagttttgacaacaaaccagtaaagaagtcttaaaaccgcctcacttcgacatagtgttaaagctagaatgttaccaatggagaaaag 418  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  39296130 aaggtttccctatagttttgacaacaaaccagtaaagaagtcttaaaaccacctcgcttcgacatagtgttaaagctaggatgttaccaatggagaaaag 39296031  T
Q  419 tgtagctcttgatttaccatatggaaaatgccc 451  Q
    |||||||||||||||||||||||||||||||||    
T  39296030 tgtagctcttgatttaccatatggaaaatgccc 39295998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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