View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9669_low_10 (Length: 486)
Name: NF9669_low_10
Description: NF9669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9669_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 167 - 467
Target Start/End: Complemental strand, 32393455 - 32393156
Alignment:
| Q |
167 |
atgaataagcatatttcttgccaacaattaatttggtcagcttgaagattgctatttagtgctacacatcacccaccaagagttgatacaagtaatatca |
266 |
Q |
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| T |
32393455 |
atgaataagcatatttcttgccaacaattaatt-ggtcagcttgaagattgctatttagtgctacacatcacccaccaagagttgatacaagtaatatca |
32393357 |
T |
|
| Q |
267 |
tatatcagaactcaatcacataactgattacaagctccaacatgtgctagcataaagatactgcaccatctcaacatgtccttccattttccacatttca |
366 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32393356 |
tatatcagaactcaatcacataactgattacaagctccaacatgtgctagcataaagatactggaccatctcaacatgtccttccattttccacatttca |
32393257 |
T |
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| Q |
367 |
ttaaaaacaatactatggctactatcatcgagtaaaagtgcaatcatagttggcaataaataaacaggtaaatataagaaaaattgttcagcagtcagca |
466 |
Q |
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| T |
32393256 |
tgaaaaacaatactatggctactatcatcaagtaaaagtgcaatcatagttggcaataaataaacaggtaaatataagaaaaattgttcagcagtcagca |
32393157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 32393908 - 32393745
Alignment:
| Q |
1 |
atgcttaccacattccaatttgtcaagtttggaaaagagtggaagaaaggacactctctgatatatctaattttattcacccaaataatttcacaaaatt |
100 |
Q |
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| T |
32393908 |
atgcttaccacattccaatttgtcaagtttggaaaagagtggaagaaaggacactct--gatatatgtaattttattcacccaaataatttcacaaaatt |
32393811 |
T |
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| Q |
101 |
aatgtgccatcatagcatgtcatcatggctctca-ggggcccgcatagccagatagttaatagtta |
165 |
Q |
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| T |
32393810 |
aatgtgccatcatagcatgtcatcatggctctcagggggcccgcatagccagatagttgatagtta |
32393745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 63 - 467
Target Start/End: Complemental strand, 26162783 - 26162378
Alignment:
| Q |
63 |
atatctaattttattcacccaaataatttcacaaaattaat-gtgccatcatagcat-gtcatcatggctctcaggggcccgcatagccagatagttaat |
160 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||| ||||||||| |||| |||||||||||||||||| ||| ||||||||||| ||| || |
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| T |
26162783 |
atatgtaattttattcacccaaatcatttcacaaaattaattgtgccatcag-gcattgtcatcatggctctcaggatcccacatagccagattgttgat |
26162685 |
T |
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| Q |
161 |
agttagatgaataagcatatttcttgccaacaattaatttggtcagcttgaagattgctatttagtgctacacatcacccaccaagagttgatacaagta |
260 |
Q |
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||||||||| |||| |||||||| ||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||| | |||||||| |
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| T |
26162684 |
agttagatggataaacatatttcctgccaacaattaatt-ggtcatcttgaagattgctatttagtgttacacatcacccaccaagagctagtacaagta |
26162586 |
T |
|
| Q |
261 |
atatcatatatcagaactcaatcacataactgattacaa-gctccaacatgtgctagcataaagatactgcaccatctcaacatgtccttccattttcca |
359 |
Q |
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||||||||||| |||| ||||| |||||||||||||||| | ||||||||||| ||||| |||||||||| |||||| ||||||||||||||||||||| |
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| T |
26162585 |
atatcatatattagaattcaattacataactgattacaaagatccaacatgtggtagcagaaagatactgtcccatctgaacatgtccttccattttcca |
26162486 |
T |
|
| Q |
360 |
catttcattaaaaacaatactatggctactatcatcgagtaaaagtgcaatcatagttggcaataaataaacaggtaaatataagaaaaattgttcagca |
459 |
Q |
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|||||||| |||| ||||| |||||||| |||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
26162485 |
catttcatgaaaagcaataatatggctatcatcatcaagtgaaagtgcaatcatagttggcaataaataaacaagtaaatataagaaaaattgttcagca |
26162386 |
T |
|
| Q |
460 |
gtcagcac |
467 |
Q |
| |
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|||||||| |
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| T |
26162385 |
gtcagcac |
26162378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 324 - 449
Target Start/End: Complemental strand, 33606069 - 33605941
Alignment:
| Q |
324 |
atactgcaccatctcaacatgtccttccattttccacatttcattaaaaacaatactatggctactatcatcg---agtaaaagtgcaatcatagttggc |
420 |
Q |
| |
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|||||||||||||| |||||||| ||||| |||||||||||||| | || |||| ||||| |||| |||||| | | |||||||||||||||||| | |
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| T |
33606069 |
atactgcaccatcttaacatgtctttccagtttccacatttcatgagaagcaattctatgactaccatcatcattaattgaaagtgcaatcatagttgac |
33605970 |
T |
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| Q |
421 |
aataaataaacaggtaaatataagaaaaa |
449 |
Q |
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|||||||||| |||||||||||||||||| |
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| T |
33605969 |
aataaataaaaaggtaaatataagaaaaa |
33605941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 26163136 - 26163085
Alignment:
| Q |
1 |
atgcttaccacattccaatttgtcaagtttggaaaagagtggaagaaaggac |
52 |
Q |
| |
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|||||||||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
26163136 |
atgcttaccacactccaatttgtcaagtttgaaaaagagtggaagaaaggac |
26163085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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