View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9669_low_11 (Length: 478)
Name: NF9669_low_11
Description: NF9669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9669_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 468
Target Start/End: Complemental strand, 43961052 - 43960614
Alignment:
| Q |
18 |
aaatcgtctactcttgattcaacaattgcaagagtatagatgttctcacaggtgttttgctacttgnnnnnnnnnnnnnnnnnnnnatccaaaactctca |
117 |
Q |
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| T |
43961052 |
aaatcgtctactcttgattcaacaattgcaagagtatagatgttctcgtaggtgttttgctacttgtatatata------------atccaaaactctca |
43960965 |
T |
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| Q |
118 |
cctataaatatcttcatacacattcttttcacttgtaaaatctaaacatgcatctttcacccgacaattgtaccatagtagtttgattaaaaatattggt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43960964 |
cctataaatatcttcatacacattcttttcacttgtaaaatctaaacatgcatctttcacccgacaattgtaccatagtagtttgattaaaaatgttggt |
43960865 |
T |
|
| Q |
218 |
gagaatagtacccaaaaaacgttcataagaaataatcaaatgataaatacaagattaagagtaatcccactattttattattcattatcatttatatgat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43960864 |
gagaatagtacccaaaaaacgttcataagaaataatcaaatgataaatacaagattaagagtaatcccactattttattattcattatcatttatatgat |
43960765 |
T |
|
| Q |
318 |
tatnnnnnnnttgtgtaaaaagacatttataaaatttattaatctgcgaaatctaaatgatacgatgcatatgagtttatgaccgttaggcagaggccgt |
417 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43960764 |
tataaaaaaattgtgtaaaaagacatttataaaatttattaatctgcgaaatctaaatgataggatgcatatgagtttatgaccgttaggcagaggccgt |
43960665 |
T |
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| Q |
418 |
aataattgattgnnnnnnngtgttaacccttaacacccctagtataatcta |
468 |
Q |
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|||||||||||| ||||||||||||||| ||||||||||| |||| |
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| T |
43960664 |
aataattgattgtttttttgtgttaacccttaacgcccctagtatagtcta |
43960614 |
T |
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