View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9669_low_14 (Length: 444)

Name: NF9669_low_14
Description: NF9669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9669_low_14
NF9669_low_14
[»] chr2 (1 HSPs)
chr2 (18-426)||(11733956-11734364)
[»] chr3 (1 HSPs)
chr3 (199-426)||(53148129-53148356)
[»] chr4 (4 HSPs)
chr4 (200-407)||(5530617-5530824)
chr4 (200-419)||(38178777-38178996)
chr4 (200-353)||(5922978-5923131)
chr4 (200-353)||(5936387-5936540)
[»] chr8 (2 HSPs)
chr8 (200-338)||(40919556-40919694)
chr8 (199-317)||(45319388-45319506)
[»] chr7 (1 HSPs)
chr7 (211-353)||(34839811-34839953)
[»] chr1 (1 HSPs)
chr1 (211-410)||(45454432-45454631)


Alignment Details
Target: chr2 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 18 - 426
Target Start/End: Original strand, 11733956 - 11734364
Alignment:
Q  18 acatcaaatacaacacaaattcaacatcactaaaaactaaaaaggaaaataatgaagctgccgacaaactcacaacataaaacgacacaatcgcaattct 117  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11733956 acatcagatacaacacaaattcaacatcactgaaaactaaaaaggaaaataatgaagctgccgacaaactcacaacataaaacgacacaatcgcaattct 11734055  T
Q  118 ctaacaacacaactgcaattatctcaaaacaatacatattcaacatggctaaaaacaaaaaggatgaatttataaccaaacttaccttgcaagcaatcac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11734056 ctaacaacacaactgcaattatctcaaaacaatacatattcaacatggctaaaaacaaaaaggatgaatttataaccaaacttaccttgcaagcaatcac 11734155  T
Q  218 aattctcagcttctttacgaacaacatcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaattattcccagcaccagactg 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11734156 aattctcagcttctttacgaacaacatcaagaacagaatcaataagctcagcgccttcggtataatgacctttagcccaattattcccagcaccagactg 11734255  T
Q  318 accgaacacaaaattatcaggacgaaagatctgaccaaacggaccggatctaacggaatccatagtaccaggctcaagatccataagaacagcgcgtgga 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11734256 accgaacacaaaattatcaggacgaaagatctgaccaaacggaccggatctaacggaatccatagtaccaggctcaagatccataagaacagcgcgtgga 11734355  T
Q  418 acatacctt 426  Q
    |||||||||    
T  11734356 acatacctt 11734364  T

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Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 199 - 426
Target Start/End: Original strand, 53148129 - 53148356
Alignment:
Q  199 ttaccttgcaagcaatcacaattctcagcttctttacgaacaacatcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaat 298  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||| |||||||    
T  53148129 ttaccttgcaagcaatcacaattctctgcttctttacgaacaacatcaagaacagagtcaatcaactcagcaccttcggtataatgacctttggcccaat 53148228  T
Q  299 tattcccagcaccagactgaccgaacacaaaattatcaggacgaaagatctgaccaaacggaccggatctaacggaatccatagtaccaggctcaagatc 398  Q
    |||| ||||||||||| || || ||||| |||||||||||||||||||||| ||| |||||||| ||||| |     |||||||||||||| ||||||||    
T  53148229 tattaccagcaccagattgtccaaacacgaaattatcaggacgaaagatcttaccgaacggaccagatctgatactttccatagtaccaggttcaagatc 53148328  T
Q  399 cataagaacagcgcgtggaacatacctt 426  Q
    ||||||||| || |  ||||||||||||    
T  53148329 cataagaactgctctaggaacatacctt 53148356  T

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Target: chr4 (Bit Score: 108; Significance: 4e-54; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 200 - 407
Target Start/End: Complemental strand, 5530824 - 5530617
Alignment:
Q  200 taccttgcaagcaatcacaattctcagcttctttacgaacaacatcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaatt 299  Q
    |||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||    
T  5530824 taccctgcaagcaatcacaattctcagcttctttcctaacaacatcaagaacagaatcaataagctcagcgccttcagtataatgccctttagcccagtt 5530725  T
Q  300 attcccagcaccagactgaccgaacacaaaattatcaggacgaaagatctgaccaaacggaccggatctaacggaatccatagtaccaggctcaagatcc 399  Q
    |||||||||||||  |||||| |||||||||||||| || | ||||||||||||| |||| || || |  |    |||||||||||| || |||||||||    
T  5530724 attcccagcaccactctgaccaaacacaaaattatccggtctaaagatctgaccatacggtccagaccggatactatccatagtacccggttcaagatcc 5530625  T
Q  400 ataagaac 407  Q
    ||||||||    
T  5530624 ataagaac 5530617  T

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Target: chr4; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 200 - 419
Target Start/End: Original strand, 38178777 - 38178996
Alignment:
Q  200 taccttgcaagcaatcacaattctcagcttctttacgaacaacatcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaatt 299  Q
    |||||||||||||||| ||||||||||| ||||| |  |||||||| | ||| |||||||| | |||||| |||||||| ||||||||||| ||||||||    
T  38178777 taccttgcaagcaatcgcaattctcagcctctttcctcacaacatccaaaacggaatcaatcaactcagcgccttcggtgtaatgacctttcgcccaatt 38178876  T
Q  300 attcccagcaccagactgaccgaacacaaaattatcaggacgaaagatctgaccaaacggaccggatctaacggaatccatagtaccaggctcaagatcc 399  Q
    ||| || ||||| ||||||||||| || || ||||| || ||||||||||| |||||||||||||| | ||  |||||||| || ||||| |||||||||    
T  38178877 atttccggcaccggactgaccgaaaacgaagttatccggtcgaaagatctggccaaacggaccggaacgaagcgaatccatggttccaggttcaagatcc 38178976  T
Q  400 ataagaacagcgcgtggaac 419  Q
    ||||| || |||||||||||    
T  38178977 ataagcacggcgcgtggaac 38178996  T

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Target: chr4; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 200 - 353
Target Start/End: Original strand, 5922978 - 5923131
Alignment:
Q  200 taccttgcaagcaatcacaattctcagcttctttacgaacaacatcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaatt 299  Q
    |||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||    
T  5922978 taccctgcaagcaatcacaattctcagcttctttcctaacaacatcaagaacagaatcaataagctcagcgccttcagtataatgccctttagcccagtt 5923077  T
Q  300 attcccagcaccagactgaccgaacacaaaattatcaggacgaaagatctgacc 353  Q
    ||| |||||||||  |||||| |||||||| ||||| || | ||||||||||||    
T  5923078 attaccagcaccactctgaccaaacacaaagttatccggtctaaagatctgacc 5923131  T

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Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 200 - 353
Target Start/End: Original strand, 5936387 - 5936540
Alignment:
Q  200 taccttgcaagcaatcacaattctcagcttctttacgaacaacatcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaatt 299  Q
    |||| |||||||||||||  || ||||||||||| | ||||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||| ||    
T  5936387 taccctgcaagcaatcactgttttcagcttctttcctaacaacatcaagaacagaatcaataagctcagcgccttcagtgtaatgtcctttagcccagtt 5936486  T
Q  300 attcccagcaccagactgaccgaacacaaaattatcaggacgaaagatctgacc 353  Q
    ||| |||||||||  ||| || || ||||| ||||| || | ||||||||||||    
T  5936487 attaccagcaccactctgtccaaagacaaagttatccggtctaaagatctgacc 5936540  T

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Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 200 - 338
Target Start/End: Original strand, 40919556 - 40919694
Alignment:
Q  200 taccttgcaagcaatcacaattctcagcttctttacgaacaacatcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaatt 299  Q
    ||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| || ||||| ||||||||||||||    
T  40919556 taccttgcaagcagtcgcaattctcagcttcttttcgaacaacatcaagaacagaatcaataagttcagctccttcagtgtaatgtcctttagcccaatt 40919655  T
Q  300 attcccagcaccagactgaccgaacacaaaattatcagg 338  Q
    ||| ||||| |||   || || |||||||| ||||||||    
T  40919656 attaccagctccattttgtccaaacacaaagttatcagg 40919694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 199 - 317
Target Start/End: Complemental strand, 45319506 - 45319388
Alignment:
Q  199 ttaccttgcaagcaatcacaattctcagcttctttacgaacaacatcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaat 298  Q
    ||||||||||||||||||||||||||| | || || |  ||||||||||||||| | ||||| ||||| ||||| || || |||||||| || ||  |||    
T  45319506 ttaccttgcaagcaatcacaattctcaacctccttccttacaacatcaagaacaaagtcaatgagctcggcaccctcagtgtaatgacccttggcgaaat 45319407  T
Q  299 tattcccagcaccagactg 317  Q
    | || || |||||||||||    
T  45319406 tgtttccggcaccagactg 45319388  T

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Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 211 - 353
Target Start/End: Complemental strand, 34839953 - 34839811
Alignment:
Q  211 caatcacaattctcagcttctttacgaacaacatcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaattattcccagcac 310  Q
    ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||| || ||||||||||| |||||||| || || || |    
T  34839953 caatcgcaattctcagcttctttacgaacaacatcgagaactgaatcaataagttcagcgccttcagtgtaatgacctttcgcccaattgttaccggcgc 34839854  T
Q  311 cagactgaccgaacacaaaattatcaggacgaaagatctgacc 353  Q
    | ||||||||||| || || ||||||||||| |||||||||||    
T  34839853 cggactgaccgaaaacgaagttatcaggacggaagatctgacc 34839811  T

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Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 211 - 410
Target Start/End: Original strand, 45454432 - 45454631
Alignment:
Q  211 caatcacaattctcagcttctttacgaacaacatcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaattattcccagcac 310  Q
    ||||||||||||||||| || || |  ||||||||||| || |||||||| | |||||| ||||| ||||| |||||||| ||||| || || || ||||    
T  45454432 caatcacaattctcagcctccttcctgacaacatcaagcaccgaatcaatcaactcagctccttctgtatagtgacctttcgcccagttgtttccggcac 45454531  T
Q  311 cagactgaccgaacacaaaattatcaggacgaaagatctgaccaaacggaccggatctaacggaatccatagtaccaggctcaagatccataagaacagc 410  Q
    | ||||| || || ||||| |||||||| || || ||||||||  | ||||| ||||| |||  ||||||||| || ||||| |||||||| ||||||||    
T  45454532 cggactgtccaaaaacaaagttatcaggccggaaaatctgaccgtatggaccagatctgacgctatccatagtccctggctccagatccatgagaacagc 45454631  T

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