View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9669_low_15 (Length: 430)
Name: NF9669_low_15
Description: NF9669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9669_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 19 - 420
Target Start/End: Complemental strand, 44013239 - 44012837
Alignment:
| Q |
19 |
gtcagatggtaaaagaccacaaaaatatttgataagttaggactcggcaagtgttt-gtgaatttcactactaaactcttctgnnnnnnnnnnnnnnnnn |
117 |
Q |
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| T |
44013239 |
gtcagatggtaaaaaaccgcagaaacatttgataagttaggactcggcaagtgttttgtgaatttcactactagactcttctgaaaaggaaaaaaaatca |
44013140 |
T |
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| Q |
118 |
nnnncttgttactagtactttatttaataataagacaattctagtcaacttgaaatttgagaatttatttatggttatttattgaaggacattttattag |
217 |
Q |
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| T |
44013139 |
aaaacttgttactagtactttatttaataataagacaattctagtcaacttgaaatttgagaatttatttatggttatttattgaaggacattttattag |
44013040 |
T |
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| Q |
218 |
ttccctatgttttgtgaatgatgaaataatcttttgaatttgtgcatgcaggctaggctttgtgattgattttctatcaaaagcaaccctggtcggtttt |
317 |
Q |
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| T |
44013039 |
ttccctatgttttgtgaatgatgaaataatcttttgaatttgtgcatgcaggctaggctttgtgattgattttctatcaaaagcaaccctggtcggtttt |
44012940 |
T |
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| Q |
318 |
atggccggtgctgctatcattgtgtcattgcagcaattgaaagggttacttggaattgtgcactttactaacaagatgcaaattattcctgtattggtct |
417 |
Q |
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| T |
44012939 |
atggccggtgctgctatcattgtgtcattgcagcaattgaaagggttacttggaattgtgcactttactaacaagatgcaaattattcctgtattggtct |
44012840 |
T |
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| Q |
418 |
ctg |
420 |
Q |
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| T |
44012839 |
ctg |
44012837 |
T |
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Back To:
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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 266 - 420
Target Start/End: Original strand, 3174142 - 3174296
Alignment:
| Q |
266 |
caggctaggctttgtgattgattttctatcaaaagcaaccctggtcggttttatggccggtgctgctatcattgtgtcattgcagcaattgaaagggtta |
365 |
Q |
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|||| |||||||||||||||||||||||||||| ||||| |||| ||||| ||||| ||||| || |||||||||||| | || ||| | ||||||||| |
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| T |
3174142 |
caggttaggctttgtgattgattttctatcaaaggcaacattggtaggtttcatggctggtgcagcaatcattgtgtcactacaacaactcaaagggtta |
3174241 |
T |
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| Q |
366 |
cttggaattgtgcactttactaacaagatgcaaattattcctgtattggtctctg |
420 |
Q |
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| T |
3174242 |
ctaggaatagttcatttcacaagcaagatgcaaatagtacctgttttggtctctg |
3174296 |
T |
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