View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9669_low_18 (Length: 389)
Name: NF9669_low_18
Description: NF9669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9669_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 17 - 355
Target Start/End: Original strand, 5510983 - 5511320
Alignment:
| Q |
17 |
acatcaggagtatttagcaatattttgaccatcaggaatacattaaatgaggtatacatcaggaatatttggatacttatttaggagtatttagaatatt |
116 |
Q |
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| T |
5510983 |
acatcaggagtatttagcaatattttgaccatcaggaatacattaaatgaggtatacatcaggaatatttggatacttatt-aggagtatttagaatatt |
5511081 |
T |
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| Q |
117 |
ttgaccatattgtgtttttcatatagaataacattacttggtatgcaattaatttaaggggtttattctgtaacctttattaacaagatacttgggaatg |
216 |
Q |
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| T |
5511082 |
ttgaccatattgtgtttttcatatagaataacattacttggtaagcaattaatttaaggggttgattctgtaacctttattaacaagatacttgggaata |
5511181 |
T |
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| Q |
217 |
atatttgtgcttcagtgcttctaatgacttcaattcgttgctttaaaatgccgtaagtgttttgtggatattaaactactagtgtattttgacaagaaac |
316 |
Q |
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| T |
5511182 |
atatttgtgcttcagtgcttctaatgacttcaattcgttgctttaaaatgccgtaagtgttttgtggatattaaactactagtgtattttgacaagaaac |
5511281 |
T |
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| Q |
317 |
aagtgctttattgtttcatgcattatcctgttttatttc |
355 |
Q |
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| T |
5511282 |
aagtgctttattgtttcatgcattatcctgttttctttc |
5511320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 5510846 - 5510915
Alignment:
| Q |
115 |
ttttgaccatattgtgtttttcatatagaataacatta-cttggtatgcaattaatttaaggggtttattc |
184 |
Q |
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| T |
5510846 |
tttttaccatattatgtttttcatttagaataacattagcttgtcatgcaa-taatttaaggggtttattc |
5510915 |
T |
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