View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9669_low_2 (Length: 682)

Name: NF9669_low_2
Description: NF9669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9669_low_2
NF9669_low_2
[»] chr3 (7 HSPs)
chr3 (89-673)||(37930622-37931207)
chr3 (140-222)||(37928871-37928953)
chr3 (1-92)||(37931221-37931311)
chr3 (185-232)||(1562818-1562865)
chr3 (185-231)||(2558771-2558817)
chr3 (165-231)||(11249984-11250050)
chr3 (187-231)||(44037504-44037548)
[»] chr6 (2 HSPs)
chr6 (185-231)||(10181069-10181115)
chr6 (185-231)||(32107893-32107939)
[»] chr4 (3 HSPs)
chr4 (91-133)||(15066156-15066198)
chr4 (54-92)||(15066214-15066252)
chr4 (185-231)||(13389044-13389090)
[»] chr8 (1 HSPs)
chr8 (185-232)||(31941092-31941139)
[»] chr7 (1 HSPs)
chr7 (185-231)||(5222631-5222677)
[»] chr5 (2 HSPs)
chr5 (185-231)||(671117-671163)
chr5 (186-231)||(2025740-2025785)
[»] chr2 (2 HSPs)
chr2 (185-223)||(44765256-44765294)
chr2 (185-233)||(39218703-39218751)
[»] scaffold0633 (1 HSPs)
scaffold0633 (187-231)||(3855-3899)
[»] chr1 (1 HSPs)
chr1 (187-231)||(41651097-41651141)


Alignment Details
Target: chr3 (Bit Score: 508; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 89 - 673
Target Start/End: Complemental strand, 37931207 - 37930622
Alignment:
Q  89 atgaagaaaataattcattgtgattaaaagtgataaaaattaaacaaatcatcaacaaggcgacaatccaccttatcacacaagtagaggagacaaggtt 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  37931207 atgaagaaaataattcattgtgattaaaagtgataaaaattaaacaaatcatcaacaaggcgacaatccaccttatcacacaagtagaggagacaaagtt 37931108  T
Q  189 cgaaccccgatcacgacatccaacctatcaatttcagcatttttccttgtttcaccgacttgatctacataacactttgtagtttgataaattatttccg 288  Q
     |||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  37931107 tgaaccccgatcacgacatccaacctatcaatttcggcattttttcttatttcaccgacttgatctacataatactttgtagtttgataaattatttccg 37931008  T
Q  289 ggttaacactttgtataacaaacaagacattctattgatataagatgtagtttttggataatgcggcatcgtttcttcataaagatatcatgggcatgat 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  37931007 ggttaacactttgtataacaaacaagacattctattgatataagatgtagtttttggataatgcggcatcgtttcttcataaagatatcatgggcattat 37930908  T
Q  389 ctgtggctgctattttatttttgtttgtttacaaaaacaaatcaaagtcaaaataaacttgattagaactactacacggtagaatattagaattactact 488  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37930907 ctgtggctgctattttatttttgtttgtttacaaaatcaaatcaaagtcaaaataaacttgattagaactactacacggtagaatattagaattactact 37930808  T
Q  489 aagcagactactaaataattggcttgaaccataatccaactttcactaacatggtgcttaagagttcagtcctgagccttccttaaaaggttattatgta 588  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  37930807 aagcagactactaaataattggcttgaaccataatccaactttcactaacatggtgcttaagagttcagtccttagccttccttaaaaggttattatgta 37930708  T
Q  589 tttatgtttctagaattgagcattaacatatttttacgaag-gnnnnnnnnnncatgaatgcgtcataatttaatctgatgtccat 673  Q
    |||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||    
T  37930707 tttatgtttctagaattgagcattaacatatttttacgaagaaaaaaaaaaaacatgaatgcgtcataatttaatctgatgtccat 37930622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 140 - 222
Target Start/End: Complemental strand, 37928953 - 37928871
Alignment:
Q  140 tcaacaaggcgacaatccaccttatcacacaagtagaggagacaaggttcgaaccccgatcacgacatccaacctatcaattt 222  Q
    ||||||||||||||||||| |||| ||||||||| |||||||||||||| || | ||| |||| |||| ||||||| ||||||    
T  37928953 tcaacaaggcgacaatccaacttaccacacaagtggaggagacaaggtttgagctccggtcacaacattcaacctaacaattt 37928871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 37931311 - 37931221
Alignment:
Q  1 gaaattcatattgagcagcagaacgtaaatgacaatgatnnnnnnnnnnnnncgtatacgtatgataattgataagagttggaatattatga 92  Q
    |||||||||||||||||||||||| ||| ||||||||||             ||||||||||||||||||||||||||||||||||||||||    
T  37931311 gaaattcatattgagcagcagaacttaa-tgacaatgataaaaaattaaaaacgtatacgtatgataattgataagagttggaatattatga 37931221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 232
Target Start/End: Complemental strand, 1562865 - 1562818
Alignment:
Q  185 ggttcgaaccccgatcacgacatccaacctatcaatttcagcattttt 232  Q
    ||||||||||||||||| ||||||| ||||| ||||||| ||||||||    
T  1562865 ggttcgaaccccgatcatgacatccgacctaacaatttcggcattttt 1562818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 185 - 231
Target Start/End: Complemental strand, 2558817 - 2558771
Alignment:
Q  185 ggttcgaaccccgatcacgacatccaacctatcaatttcagcatttt 231  Q
    ||||| ||||||||||| ||||||| ||||| |||||||||||||||    
T  2558817 ggttcaaaccccgatcatgacatccgacctaacaatttcagcatttt 2558771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 165 - 231
Target Start/End: Complemental strand, 11250050 - 11249984
Alignment:
Q  165 cacacaagtagaggagacaaggttcgaaccccgatcacgacatccaacctatcaatttcagcatttt 231  Q
    ||||||||||||||   || ||||||||||||||||| | ||||| ||||| ||||||| |||||||    
T  11250050 cacacaagtagaggtaccagggttcgaaccccgatcatggcatccgacctaacaatttctgcatttt 11249984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 44037504 - 44037548
Alignment:
Q  187 ttcgaaccccgatcacgacatccaacctatcaatttcagcatttt 231  Q
    |||||||| |||||||||||||| ||||| ||||||| |||||||    
T  44037504 ttcgaacctcgatcacgacatccgacctaacaatttcggcatttt 44037548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 231
Target Start/End: Complemental strand, 10181115 - 10181069
Alignment:
Q  185 ggttcgaaccccgatcacgacatccaacctatcaatttcagcatttt 231  Q
    ||||||||||||||||||||||||| ||||| ||||||| |||||||    
T  10181115 ggttcgaaccccgatcacgacatccgacctaacaatttcggcatttt 10181069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 32107893 - 32107939
Alignment:
Q  185 ggttcgaaccccgatcacgacatccaacctatcaatttcagcatttt 231  Q
    ||||||||||||||||| |||||||| |||| ||||||| |||||||    
T  32107893 ggttcgaaccccgatcatgacatccagcctaacaatttcggcatttt 32107939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 133
Target Start/End: Complemental strand, 15066198 - 15066156
Alignment:
Q  91 gaagaaaataattcattgtgattaaaagtgataaaaattaaac 133  Q
    ||||||||||||||||| |||||||||||| ||||||||||||    
T  15066198 gaagaaaataattcattatgattaaaagtgctaaaaattaaac 15066156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 92
Target Start/End: Complemental strand, 15066252 - 15066214
Alignment:
Q  54 gtatacgtatgataattgataagagttggaatattatga 92  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  15066252 gtatatgtatgataattgataagagttggaatattatga 15066214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 185 - 231
Target Start/End: Complemental strand, 13389090 - 13389044
Alignment:
Q  185 ggttcgaaccccgatcacgacatccaacctatcaatttcagcatttt 231  Q
    ||||||||||||| ||| ||||||| ||||| |||||||||||||||    
T  13389090 ggttcgaaccccggtcatgacatccgacctaacaatttcagcatttt 13389044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 31941092 - 31941139
Alignment:
Q  185 ggttcgaaccccgatcacgacatccaacctatcaatttcagcattttt 232  Q
    ||||||||||||||||| |||||||| |||| ||||||| ||||||||    
T  31941092 ggttcgaaccccgatcatgacatccagcctaacaatttcggcattttt 31941139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 5222631 - 5222677
Alignment:
Q  185 ggttcgaaccccgatcacgacatccaacctatcaatttcagcatttt 231  Q
    ||||||||||||||||| |||||||||| || ||||||| |||||||    
T  5222631 ggttcgaaccccgatcatgacatccaacttaacaatttcggcatttt 5222677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 671117 - 671163
Alignment:
Q  185 ggttcgaaccccgatcacgacatccaacctatcaatttcagcatttt 231  Q
    ||||||||||||||||| ||||||| ||||| ||||||| |||||||    
T  671117 ggttcgaaccccgatcatgacatccgacctaacaatttcggcatttt 671163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 2025740 - 2025785
Alignment:
Q  186 gttcgaaccccgatcacgacatccaacctatcaatttcagcatttt 231  Q
    |||||||||||||||| ||||||| ||||| ||||||| |||||||    
T  2025740 gttcgaaccccgatcatgacatccgacctaacaatttccgcatttt 2025785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 185 - 223
Target Start/End: Complemental strand, 44765294 - 44765256
Alignment:
Q  185 ggttcgaaccccgatcacgacatccaacctatcaatttc 223  Q
    ||||||||||||||||| ||||||||||||| |||||||    
T  44765294 ggttcgaaccccgatcatgacatccaacctaacaatttc 44765256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 39218751 - 39218703
Alignment:
Q  185 ggttcgaaccccgatcacgacatccaacctatcaatttcagcatttttc 233  Q
    |||||||||||||||||  |||||| ||||| ||||||| |||||||||    
T  39218751 ggttcgaaccccgatcataacatccgacctaacaatttcggcatttttc 39218703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0633 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 3855 - 3899
Alignment:
Q  187 ttcgaaccccgatcacgacatccaacctatcaatttcagcatttt 231  Q
    ||||||||||||||| ||| ||||||||| ||||||| |||||||    
T  3855 ttcgaaccccgatcatgacgtccaacctaacaatttcggcatttt 3899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 41651141 - 41651097
Alignment:
Q  187 ttcgaaccccgatcacgacatccaacctatcaatttcagcatttt 231  Q
    ||||||||||||||| ||| ||||||||| ||||||| |||||||    
T  41651141 ttcgaaccccgatcatgacgtccaacctaacaatttcggcatttt 41651097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University