View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9669_low_21 (Length: 384)
Name: NF9669_low_21
Description: NF9669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9669_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 17 - 365
Target Start/End: Complemental strand, 37931632 - 37931284
Alignment:
| Q |
17 |
attttcagctgcaccaagttgttgggtcgtactgcttatctatggaaatatagaagctcatgttaaggtatggttaagggtgggagtatgaacaggttcc |
116 |
Q |
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| T |
37931632 |
attttcagccgcaccaagttgttgggtcgtactgcttatctatggaaatatagaagctcatgttaaggtatggttaagggtgggagtatgaacaggttcc |
37931533 |
T |
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| Q |
117 |
atgttggtaccgctcccatttccaaaagtccaaatcattttctactagatggggatatgaaagaggaaggcaggctgaggcgatattgttatttgtagag |
216 |
Q |
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| T |
37931532 |
atgttggtaccgctcccgtttccaaaagtccaaatcattttctactagatggggatatgaaagaggaaggcaggctgaggcgatattgttatttgtagag |
37931433 |
T |
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| Q |
217 |
cattgactgacgtggcgaaggactgacattgttttgaggtcacatcccatgcctgcttggtttatgaacacaataatttattttgcctgcagtaagaaag |
316 |
Q |
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| T |
37931432 |
cattgactgacgtggccaaggactgacattgttttgaggtcacatcccatgcctgcttggtttatgaacacaataatttattttgcctgcagtaagaaag |
37931333 |
T |
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| Q |
317 |
tggccgctgcattaccatgaagaaattcatattgagcagcagaacttaa |
365 |
Q |
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| T |
37931332 |
tggccgctgcattaccatgaagaaattcatattgagcagcagaacttaa |
37931284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 207 - 365
Target Start/End: Complemental strand, 15066468 - 15066303
Alignment:
| Q |
207 |
atttgtagagcattgactgacgtggcgaaggactgacattgttttgaggtcacatcccatg---------cctgcttggtttatgaacacaataatttat |
297 |
Q |
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| T |
15066468 |
atttgtagagcat----tgacgtggcgaaggattgacattgttttgaggtcacatcccatggatgttaaacctatttggtttatgaacacaataatttat |
15066373 |
T |
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| Q |
298 |
tttgcctgcagtaagaaagtggccgctgcattaccatgaagaaat--tcatattgagcagcagaacttaa |
365 |
Q |
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| T |
15066372 |
tttgcctgcagtaagaaaatggccactgcattaccatgaagaaataatcatattgagcagcagaacttaa |
15066303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 83 - 170
Target Start/End: Complemental strand, 15066625 - 15066538
Alignment:
| Q |
83 |
ggtatggttaagggtgggagtatgaacaggttccatgttggtaccgctcccatttccaaaagtccaaatcattttctactagatgggg |
170 |
Q |
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| T |
15066625 |
ggtatggttaagggtgggagtatgaacaggttctatgttggcaccgctccagtttccaaaagatcaaatcatttcctactagatgggg |
15066538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 84 - 170
Target Start/End: Complemental strand, 15054862 - 15054776
Alignment:
| Q |
84 |
gtatggttaagggtgggagtatgaacaggttccatgttggtaccgctcccatttccaaaagtccaaatcattttctactagatgggg |
170 |
Q |
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| T |
15054862 |
gtatagttaagggttggagtatgaacaagttctatgttggcaccgctccggtttccaaaagatcaaatcatttcctactagatgggg |
15054776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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