View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9669_low_24 (Length: 359)
Name: NF9669_low_24
Description: NF9669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9669_low_24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 15 - 231
Target Start/End: Complemental strand, 8818517 - 8818301
Alignment:
| Q |
15 |
cacataacacttctatctcacttggtactttgtaaatttgaacacatgtaaaggaacgtgataacacactcactcaagcgacacgtcaggtagaagtcca |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||| |
|
|
| T |
8818517 |
cacataacacttctatctcacttggtactttgtaaatttgaacacatgtaaaggaacgtgatagcatactcactcaagcgacacgtcaagtagaagtcca |
8818418 |
T |
|
| Q |
115 |
ctagtatgtgttccccactattagacaagggaaaactcttacttctacgtatccattggtgcaatagaaaattaaaacaaacgtatttcttgtagaaaat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8818417 |
ctagtatgtgttccccactattagacaagggaaaactcttacttctacgtatccattggtgcaatagaaaattaaaacaaacgtatttcttgtagaaaat |
8818318 |
T |
|
| Q |
215 |
gcttgtgggttagtaag |
231 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
8818317 |
gcttgtgggttagtaag |
8818301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 277 - 341
Target Start/End: Complemental strand, 8818255 - 8818191
Alignment:
| Q |
277 |
tagaaacatttaaagaatgaaggatgttctacctcaatttttgacttgaagtattaccgtcacat |
341 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||||||| |||||||||| ||||||| |
|
|
| T |
8818255 |
tagaaacatttaaagaatgaaggatgttataccccaatttttgacctgaagtattattgtcacat |
8818191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University