View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9669_low_32 (Length: 283)
Name: NF9669_low_32
Description: NF9669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9669_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 6 - 267
Target Start/End: Complemental strand, 35761849 - 35761588
Alignment:
| Q |
6 |
agaagcaaaggttaatccaacagtgaatttagcttcctctaatgcagcactaaaccttcgaagctctttaacaggacaagtaccattgtccttaacaaca |
105 |
Q |
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| T |
35761849 |
agaatcaaaggttaatccaacagtgaatttagcttcctctaatgcagcactaaaccttcgaagctctttaacaggacaagtaccattgtccttaacaaca |
35761750 |
T |
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| Q |
106 |
agctgggaaggtttaacatcatagaaaattgggataaccctcttttttgattccatgagaagagcaagctcatggagacaaaaataagagtcacaataag |
205 |
Q |
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| T |
35761749 |
agctgggaaggtttaacatcatagaaaattgggataaccctcttttttgattccatgagaagagcaagctcatggagacaaaaataagagtcacaataag |
35761650 |
T |
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| Q |
206 |
ttggagaaaacacagcaacaccaactttgcaacctagaattcctttatcaatatgatcaaac |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35761649 |
ttggagaaaacacagcaacaccaactttgcaacctagaattcctttatcaatatgatcaaac |
35761588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 148 - 230
Target Start/End: Original strand, 3387244 - 3387326
Alignment:
| Q |
148 |
ttttttgattccatgagaagagcaagctcatggagacaaaaataagagtcacaataagttggagaaaacacagcaacaccaac |
230 |
Q |
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| T |
3387244 |
ttttttgtctccatgagaagagcgagttcatggagacaataataagagtcgcaataattaggagagaagacaacaacaccaac |
3387326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 148 - 262
Target Start/End: Original strand, 3393760 - 3393874
Alignment:
| Q |
148 |
ttttttgattccatgagaagagcaagctcatggagacaaaaataagagtcacaataagttggagaaaacacagcaacaccaactttgcaacctagaattc |
247 |
Q |
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| T |
3393760 |
ttttttgtctccatcagaagagcgagttcgtggagacaataataagagtcacaataacgaggagagaacacggtaacaccaaccttacaaccaataattg |
3393859 |
T |
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| Q |
248 |
ctttatcaatatgat |
262 |
Q |
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| T |
3393860 |
ctttatcgatatgat |
3393874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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