View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9669_low_35 (Length: 267)

Name: NF9669_low_35
Description: NF9669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9669_low_35
NF9669_low_35
[»] chr1 (3 HSPs)
chr1 (144-225)||(46902040-46902121)
chr1 (61-151)||(46901929-46902019)
chr1 (1-47)||(46901667-46901713)


Alignment Details
Target: chr1 (Bit Score: 82; Significance: 8e-39; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 144 - 225
Target Start/End: Original strand, 46902040 - 46902121
Alignment:
Q  144 ctcatgtttttagactcatgtattggaaggtgattccaaaaggagaagcaaaccaaattgatcccagccaatcccactccat 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46902040 ctcatgtttttagactcatgtattggaaggtgattccaaaaggagaagcaaaccaaattgatcccagccaatcccactccat 46902121  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 61 - 151
Target Start/End: Original strand, 46901929 - 46902019
Alignment:
Q  61 aaataaattcatcaagcaaatcttgaacaatcgctcccatgcagatattattgttctgctgctggaactaaacgcaaccatacctcatgtt 151  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||| ||||    
T  46901929 aaataaattcatcaagcaaatcttgaacaatcgctcccatgcagatattattgttcttgtgctggaactaaatgcaaccatacctcctgtt 46902019  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 46901667 - 46901713
Alignment:
Q  1 ttgtgctcttaattgaaaatggttttcacttgtcaattatatctata 47  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  46901667 ttgtgctcttgattgaaaatggttttcacttgtcaattatatctata 46901713  T

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