View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9669_low_5 (Length: 615)
Name: NF9669_low_5
Description: NF9669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9669_low_5 |
 | |
|
| [»] scaffold0103 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0103 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 143 - 595
Target Start/End: Complemental strand, 5130 - 4676
Alignment:
| Q |
143 |
tatgctaattactatatcgttatattgtaatatagttaaatccttttttcaactaagtataatttttgctctatctatctctatatcatatcatatatga |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5130 |
tatgctaattactatatcgttatattgtaatatagttaaatccttttttcaactaagtataatttttgctctatctatttctatatcatatcatatatga |
5031 |
T |
|
| Q |
243 |
ataaaaccatggctcacacctagaaaataagcggagttagggagatgacacttattgaagtagtcttgttcaacctcttatttgaaagttgcattaatat |
342 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
5030 |
ataaaaccatggctcccacctagaaaataagcggagttagggagatgacacttattgaagtagtcttgttcaacctattatttgaaagttgtattaatat |
4931 |
T |
|
| Q |
343 |
tgttaatgtcaattttgatttaatgcatatgtacttgattacctatcgatgtagaaaacttaagtagactatttcctaacaacttaaagtaaaaatctct |
442 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4930 |
tgttaatgtcaattttgatttaatgcatatgtacttgattacctatcgatgtagaaaacttaagtagactatttcctaacaacttaaagtaaaaatttct |
4831 |
T |
|
| Q |
443 |
tcctcctatgatg--tataaccaagtttgtatcaattatgtttcaaatgattttcatacctcacactttggaatattagttagacggcacaaataacttt |
540 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4830 |
tcctcctatgatgtatataactaagtttgtatcaattatgtttcaaatgattttcatacctcacactttggaatattagttagacggcacaaataacttt |
4731 |
T |
|
| Q |
541 |
tcaatcactatctaacattacaatgtactctcatgcgaaactaagaaagagttga |
595 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
4730 |
tcaatcactatctaacattataatgtactctcatgcgaaactaagaaatagttga |
4676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 412; Significance: 0; HSPs: 15)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 143 - 595
Target Start/End: Original strand, 2634879 - 2635333
Alignment:
| Q |
143 |
tatgctaattactatatcgttatattgtaatatagttaaatccttttttcaactaagtataatttttgctctatctatctctatatcatatcatatatga |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2634879 |
tatgctaattactatatcgttatattgtaatatagttaaatccttttttcaactaagtataatttttgctctatctatttctatatcatatcatatatga |
2634978 |
T |
|
| Q |
243 |
ataaaaccatggctcacacctagaaaataagcggagttagggagatgacacttattgaagtagtcttgttcaacctcttatttgaaagttgcattaatat |
342 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
2634979 |
ataaaaccatggctcccacctagaaaataagcggagttagggagatgacacttattgaagtagtcttgttcaacctattatttgaaagttgtattaatat |
2635078 |
T |
|
| Q |
343 |
tgttaatgtcaattttgatttaatgcatatgtacttgattacctatcgatgtagaaaacttaagtagactatttcctaacaacttaaagtaaaaatctct |
442 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2635079 |
tgttaatgtcaattttgatttaatgcatatgtacttgattacctatcgatgtagaaaacttaagtagactatttcctaacaacttaaagtaaaaatttct |
2635178 |
T |
|
| Q |
443 |
tcctcctatgatg--tataaccaagtttgtatcaattatgtttcaaatgattttcatacctcacactttggaatattagttagacggcacaaataacttt |
540 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2635179 |
tcctcctatgatgtatataactaagtttgtatcaattatgtttcaaatgattttcatacctcacactttggaatattagttagacggcacaaataacttt |
2635278 |
T |
|
| Q |
541 |
tcaatcactatctaacattacaatgtactctcatgcgaaactaagaaagagttga |
595 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
2635279 |
tcaatcactatctaacattataatgtactctcatgcgaaactaagaaatagttga |
2635333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 594
Target Start/End: Original strand, 2592766 - 2593357
Alignment:
| Q |
1 |
atgatgtagttgttgtggtaat----aggtgaaattgaaaagaaaattgagaagaggttcagggaaattggtttcaccttagcttcttaaaaatttcatt |
96 |
Q |
| |
|
|||||||||||||||| ||||| ||| |||||||||||||||| |||||||||||||| |||||||||||||| ||||||||| ||||| ||||||| |
|
|
| T |
2592766 |
atgatgtagttgttgtagtaattaataggcgaaattgaaaagaaaactgagaagaggttcaaggaaattggtttcaacttagcttcctaaaattttcatt |
2592865 |
T |
|
| Q |
97 |
tctacaatcatcaaaattgtaggcttttctaacataagacaattcctatgctaattactatatcgttatattgtaatatagttaaatccttttttcaact |
196 |
Q |
| |
|
|||| |||||||||||||||||| || |||||||||| |||||||||||| |||| ||||||| ||||||||||||| ||||||||||||||| | ||| |
|
|
| T |
2592866 |
tctataatcatcaaaattgtaggtttgtctaacataacacaattcctatgataataactatatggttatattgtaatttagttaaatccttttg-ctact |
2592964 |
T |
|
| Q |
197 |
aagtataatttttgctctatctatctctatatcatatcatatatgaataaaaccatggctcacacctagaaaataagcggagttagggagatgacactta |
296 |
Q |
| |
|
| ||||| | |||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2592965 |
atgtatattctttggtctatctatctctatatc------tatatgaataaaaccatggctcccacctagaaaataagcggagttagggagatgacactta |
2593058 |
T |
|
| Q |
297 |
ttgaagtagtcttgttcaacctcttatttgaaagttgcattaatattgttaatgtcaattttgatttaatgcatatgtacttgattacctatcgatgtag |
396 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
2593059 |
ttgaagtagtcttgtttaacctcttatttaaaaattgtattaatattgttaatgtcaattttgatttaatgcatatgtacttgattccctagcgatgtag |
2593158 |
T |
|
| Q |
397 |
aaaactt-aagtagactatttcctaacaacttaaagtaaaaatctcttcctcctatgatgtataaccaagtttgtatcaattatgtttcaaatgattttc |
495 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| | |||||||| |||| |||||||||| |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2593159 |
aaaacttgaagtagaacatttcctaacaacttgatgtaaaaatttcttactcctatgatatataaccaagttggtatcaattatgtttcaaatgattttc |
2593258 |
T |
|
| Q |
496 |
atacctcacactttggaatattagttagacggcacaaataacttttcaatcactatctaacattacaatgtactctcatgcgaaactaagaaagagttg |
594 |
Q |
| |
|
|||||||| ||||| ||| ||||||||||| ||||||||||||| |||||| ||||||||| |||||| ||| |||||| ||||| |||||||||||| |
|
|
| T |
2593259 |
atacctcaaactttagaaaattagttagaccacacaaataactttccaatcaatatctaacaatacaatatacactcatgtgaaaccaagaaagagttg |
2593357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 24 - 329
Target Start/End: Original strand, 2624311 - 2624619
Alignment:
| Q |
24 |
ggtgaaattgaaaagaaaattgagaagaggttcagggaaattggtttcaccttagcttcttaaaaatttcatttctacaatcatcaaaattgtaggcttt |
123 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
2624311 |
ggtgaaattgaaaagaaaattgagaagaagttcagagaaattggtttcaccttagcttccaaaaaat--catttctacaatcatcaaaattgtaggtttt |
2624408 |
T |
|
| Q |
124 |
tctaacataagacaattcctatgctaattactatatcgttatattgtaatatagttaaatccttttttcaactaagtataatttttgctctatctatctc |
223 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||| || |||| ||||||| ||| ||||| | |||| |
|
|
| T |
2624409 |
tctaacataacacaatttatatgctaattactatatgtttatattgtaatatagttaaatccttttctctactatgtataatctttattctatatttctc |
2624508 |
T |
|
| Q |
224 |
t-----atatcatatcatatatgaataaaaccatggctcacacctagaaaataagcggagttagggagatgacacttattgaagtagtcttgttcaacct |
318 |
Q |
| |
|
| ||||||||||||||||||||||||||||| ||| |||||| |||| ||| ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2624509 |
tatatcatatcatatcatatatgaataaaaccatgactcccacctaaaaaaaaagtggagttaaggagatgacacttattgaagtagtcttgttcaacct |
2624608 |
T |
|
| Q |
319 |
cttatttgaaa |
329 |
Q |
| |
|
||||||||||| |
|
|
| T |
2624609 |
cttatttgaaa |
2624619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 2568502 - 2568334
Alignment:
| Q |
1 |
atgatgtagttgttgtggtaataggtgaaattgaaaagaaaattgagaagaggttcagggaaattggtttcaccttagcttcttaaaaatttcatttcta |
100 |
Q |
| |
|
|||||||| |||||||| ||| ||||||||||||||| ||||||||| |||||| | ||||||||||| ||||||||||| ||||||||||||| || |
|
|
| T |
2568502 |
atgatgtacttgttgtgataacaggtgaaattgaaaataaaattgag--gaggtttacggaaattggttgtcccttagcttctaaaaaatttcatttgta |
2568405 |
T |
|
| Q |
101 |
caatcatcaaaattgtaggcttttctaacataagacaattcctatgctaattactatatcgttatattgta |
171 |
Q |
| |
|
|||||||||||||||| || ||||| |||||||||||||||||||| |||||||||||| ||||| ||||| |
|
|
| T |
2568404 |
caatcatcaaaattgttggtttttcaaacataagacaattcctatgttaattactatatagttattttgta |
2568334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 293 - 498
Target Start/End: Complemental strand, 2568238 - 2568033
Alignment:
| Q |
293 |
cttattgaagtagtcttgttcaacctcttatttgaaagttgcattaatattgttaatgtcaattttgatttaatgcatatgtacttgattacctatcgat |
392 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||| | ||| |||||||||||||||||| ||||||||| |||||||||| ||||| ||||| || ||| |
|
|
| T |
2568238 |
cttattgaagtagtctaattccacctcttatttgagaattgtattaatattgttaatgtcgattttgattaaatgcatatgcacttgtttaccaatggat |
2568139 |
T |
|
| Q |
393 |
gtagaa-aactt-aagtagactatttcctaacaacttaaagtaaaaatctcttcctcctatgatgtataaccaagtt--tgtatcaattatgtttcaaat |
488 |
Q |
| |
|
|||||| ||||| ||||||| ||||||||||||||||| |||||| | ||||||||||||| ||||||||||| | |||||||| |||| ||||| |
|
|
| T |
2568138 |
gtagaacaacttgaagtagaatatttcctaacaacttagtgtaaaactttcttcctcctatg----ataaccaagttggtatatcaattctgttacaaat |
2568043 |
T |
|
| Q |
489 |
gattttcata |
498 |
Q |
| |
|
|||||||||| |
|
|
| T |
2568042 |
gattttcata |
2568033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 42 - 133
Target Start/End: Original strand, 2624631 - 2624722
Alignment:
| Q |
42 |
attgagaagaggttcagggaaattggtttcaccttagcttcttaaaaatttcatttctacaatcatcaaaattgtaggcttttctaacataa |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
2624631 |
attgagaagaggttcagggaaattggtttcaccttagcttcctaaaaatttcatttctacaattatgaaaattgtaggcttttctaacataa |
2624722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 456 - 596
Target Start/End: Complemental strand, 2671511 - 2671371
Alignment:
| Q |
456 |
tataaccaagtttgtatcaattatgtttcaaatgattttcatacctcacactttggaatattagttagacggcacaaataacttttcaatcactatctaa |
555 |
Q |
| |
|
|||||||||| | |||||||| | |||||||||||||||||||||||| |||||||| |||||||||| | | |||| || ||||||||| || ||||| |
|
|
| T |
2671511 |
tataaccaagatgttatcaattctatttcaaatgattttcatacctcactctttggaaaattagttagaagccccaaagaatttttcaatctctctctaa |
2671412 |
T |
|
| Q |
556 |
cattacaatgtactctcatgcgaaactaagaaagagttgaa |
596 |
Q |
| |
|
|| | ||||||| |||||| |||||||||||||| ||||| |
|
|
| T |
2671411 |
tatgataatgtacactcatgtgaaactaagaaagatttgaa |
2671371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 29 - 191
Target Start/End: Complemental strand, 2671846 - 2671688
Alignment:
| Q |
29 |
aattgaaaagaaaattgagaagaggttcagggaaattggtttcacctt-agcttcttaaaaatttcatttctacaatcatcaaaattgtaggcttttcta |
127 |
Q |
| |
|
||||||||||||||||||||||||||| | ||| |||| || | |||| |||||| ||| |||||| | |||||||||||||||||| || ||||| | |
|
|
| T |
2671846 |
aattgaaaagaaaattgagaagaggtttaaggagattgtttgctcctttagcttccaaaagttttcatctgtacaatcatcaaaattgttggtttttcaa |
2671747 |
T |
|
| Q |
128 |
acataagacaattcctatgctaattactatatcgttatattgtaatatagttaaatcctttttt |
191 |
Q |
| |
|
||||| |||||||||||| ||||||| ||| |||||||||||||||| ||| |||||| |
|
|
| T |
2671746 |
acatagcacaattcctatgttaattac-----ggttctattgtaatatagttacatcttttttt |
2671688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 484 - 593
Target Start/End: Original strand, 2566435 - 2566543
Alignment:
| Q |
484 |
caaatgattttcatacctcacactttggaatattagttagacggcacaaataacttttcaatcactatctaacattacaatgtactctcatgcgaaacta |
583 |
Q |
| |
|
|||||||||||||||||||| |||||| | |||||||||| |||||||| || ||| ||| | || | |||||||| ||||||| |||||| ||||||| |
|
|
| T |
2566435 |
caaatgattttcatacctcattctttggtaaattagttagaaggcacaaagaa-tttccaaactctttttaacattataatgtacactcatgtgaaacta |
2566533 |
T |
|
| Q |
584 |
agaaagagtt |
593 |
Q |
| |
|
||||| |||| |
|
|
| T |
2566534 |
agaaatagtt |
2566543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 2596043 - 2595962
Alignment:
| Q |
16 |
tggtaataggtgaaattgaaaagaaaattgagaagaggttcagggaaattggtttcaccttagcttcttaaaaatttcattt |
97 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||| ||| ||||| | || | |||||||| ||||||||||||| |
|
|
| T |
2596043 |
tggtaataggtaaaattgaaaagaaaaatgagaagaggtttaggaaaattagatttcctttagcttccgaaaaatttcattt |
2595962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 296
Target Start/End: Complemental strand, 2568324 - 2568258
Alignment:
| Q |
230 |
atatcatatatgaataaaaccatggctcacacctagaaaataagcggagttagggagatgacactta |
296 |
Q |
| |
|
||||||||||||| ||||| | |||||| ||||| || ||||| |||||||||||||||||||||| |
|
|
| T |
2568324 |
atatcatatatgattaaaatcttggctcccaccttgagaataatgggagttagggagatgacactta |
2568258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 260 - 301
Target Start/End: Complemental strand, 2671633 - 2671592
Alignment:
| Q |
260 |
acctagaaaataagcggagttagggagatgacacttattgaa |
301 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2671633 |
accttgaaaataaggggagttagggagatgacacttattgaa |
2671592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 2440821 - 2440872
Alignment:
| Q |
1 |
atgatgtagttgttgtggtaataggtgaaattgaaaagaaaattgagaagagg |
53 |
Q |
| |
|
|||||| |||||||||||||||| |||||||| ||||||||| |||||||||| |
|
|
| T |
2440821 |
atgatggagttgttgtggtaatatgtgaaatt-aaaagaaaaatgagaagagg |
2440872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 294 - 338
Target Start/End: Complemental strand, 2640572 - 2640528
Alignment:
| Q |
294 |
ttattgaagtagtcttgttcaacctcttatttgaaagttgcatta |
338 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||| |||||||| |
|
|
| T |
2640572 |
ttattgaagaagtcttgttctacctcttatttgaaaattgcatta |
2640528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 294 - 338
Target Start/End: Complemental strand, 2595706 - 2595662
Alignment:
| Q |
294 |
ttattgaagtagtcttgttcaacctcttatttgaaagttgcatta |
338 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||| ||| |||| |
|
|
| T |
2595706 |
ttattgaagaagtcttgttctacctcttatttgaaaattgtatta |
2595662 |
T |
|
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