View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9669_low_8 (Length: 522)
Name: NF9669_low_8
Description: NF9669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9669_low_8 |
 | |
|
| [»] scaffold0376 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 461; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 1 - 521
Target Start/End: Original strand, 15475420 - 15475940
Alignment:
| Q |
1 |
attcgaggttttcgatatgaaggtggtacttctactactagtagtaaggtttttgtttatgatggcttgtataagataattgaattttggtttgaaaaag |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15475420 |
attcgaggttttcgatatgaaggtgctacttctactactagtagtaaggtttttgtttatgatggcttgtataagataattgaattttggtttgaaaaag |
15475519 |
T |
|
| Q |
101 |
gtatatctgggtttggtgtttataagtttaagctatcaagggttcaaggtcaacctaagatgggtagtatgatccttaaggaggccagtatgcttatgag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
15475520 |
gtatatctgggtttggtgtttataagtttatgttatcaagggttcaaggtcaacctaagatgggtagtatgatccttaaggaagctagtatgcttatgag |
15475619 |
T |
|
| Q |
201 |
aggccatttatgtgataatcatatgtatgtcctttctgatgatatttcaaatgggaaggagaatattggtgtgaggctatataatgacattgatagtgat |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15475620 |
aggccatttatgtgataatcatatgtgtgtcctttctgatgatatttccaatgggaaggagaatattggtgtgaggctatataatgacattgatagtgat |
15475719 |
T |
|
| Q |
301 |
ctctatcctatgcaatttgagtatctcccgaaggcggcatttccaatgttcttgcttcctcatagtatgacgacaacgaaaaagatgagggtgatagagt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
15475720 |
ctctatcctatgcaatttgagtatctcccgaaagcggcatttccaatgttcttgcttcctcaaagtatgacgacgaggaaaaagatgagggtgatagagt |
15475819 |
T |
|
| Q |
401 |
gttctgaatgcgttgatggatgtgtttcttcaatcatgaatggcaacactaccccttatagtaaaagtgggattcttttgaaagggaggtcattgattta |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
15475820 |
gttctgaatgcgttgatggatgtgtttcttcaatcatgaatggcaacactaccccttatagtaaaagtgggattcttttgaaagggaggtcgttaattta |
15475919 |
T |
|
| Q |
501 |
tgaatgtggtccattttgtag |
521 |
Q |
| |
|
|||||| ||||| |||||||| |
|
|
| T |
15475920 |
tgaatgcggtcctttttgtag |
15475940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 521
Target Start/End: Complemental strand, 15168332 - 15167813
Alignment:
| Q |
1 |
attcgaggttttcgatatgaaggtggtacttctactactagtagtaaggtttttgtttatgatggcttgtataagataattgaattttggtttgaaaaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
15168332 |
attcgaggttttcgatatgaaggtggtacttctactactagtagtaaggtttttgtttatgatggcttgtataagataattaaattttggtttgaaaaag |
15168233 |
T |
|
| Q |
101 |
gtatatctgggtttggtgtttataagtttaagctatcaagggttcaaggtcaacctaagatgggtagtatgatccttaaggaggccagtatgcttatgag |
200 |
Q |
| |
|
|||||||| |||| ||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15168232 |
gtatatctaggtt-ggtgtttatcagtttatgttatcaagggttcaaggtcaacctaagatgggtagtatgatccttaaggaagccagtatgcttatgag |
15168134 |
T |
|
| Q |
201 |
aggccatttatgtgataatcatatgtatgtcctttctgatgatatttcaaatgggaaggagaatattggtgtgaggctatataatgacattgatagtgat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||| |||| |||||||||||| |
|
|
| T |
15168133 |
aggccatttatgtgataatcatatgtatgtcctttctgatgatatttccaatgggaaggagaatatcggtgtgaggttatattatgagattgatagtgat |
15168034 |
T |
|
| Q |
301 |
ctctatcctatgcaatttgagtatctcccgaaggcggcatttccaatgttcttgcttcctcatagtatgacgacaacgaaaaagatgagggtgatagagt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
15168033 |
ctctatcctatgcaatttgagtatctcccaaaggcggcatttccaatgttgttgcttcctcaaagtatgacgacgaggaaaaagatgagggtgatagagt |
15167934 |
T |
|
| Q |
401 |
gttctgaatgcgttgatggatgtgtttcttcaatcatgaatggcaacactaccccttatagtaaaagtgggattcttttgaaagggaggtcattgattta |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
15167933 |
gttctgaatgcgttgatggatgtgtttcttcaatcatgaatagcaacactaccccttatagtaaaagtgggattcttttgaaagggaggtctttgattta |
15167834 |
T |
|
| Q |
501 |
tgaatgtggtccattttgtag |
521 |
Q |
| |
|
|||||||||||| |||||||| |
|
|
| T |
15167833 |
tgaatgtggtcctttttgtag |
15167813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 35 - 521
Target Start/End: Original strand, 23253170 - 23253654
Alignment:
| Q |
35 |
ctactagtagtaaggtttttgtttatgatggcttgtataagataattgaattttggtttgaaaaaggtatatctgggtttggtgtttataagtttaagct |
134 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
23253170 |
ctactactagtaaggtttttgtttatgatggcttgtataagataattgattgttggtttgaaaaaggtatatctgggtttggtgtttataagtttatgtt |
23253269 |
T |
|
| Q |
135 |
atcaagggttcaaggtcaacctaagatgggtagtatgatccttaaggaggccagtatgcttatgagaggccatttatgtgataatcatatgtatgtcctt |
234 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||| |||||||||| || ||||||||||||| |
|
|
| T |
23253270 |
atcaagggttgaaggtcaacctaagatgggtagtatgatccttaaggaagctggtatgcttaagagaggccaattatgtgata-tcctatgtatgtcctt |
23253368 |
T |
|
| Q |
235 |
tctgatgatatttcaaatgggaaggagaatattggtgtgaggctatataatgacattgatagtgatctctatcctatgcaatttgagtatctcccgaagg |
334 |
Q |
| |
|
| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
23253369 |
tatgatgatatttccaatgggaaggagaatattggtgtgaggctatataatgacattgatagtgatct-tatcctatgcaatttgagtatctcctgaagg |
23253467 |
T |
|
| Q |
335 |
cggcatttccaatgttcttgcttcctcatagtatgacgacaacgaaaaagatgagggtgatagagtgttctgaatgcgttgatggatgtgtttcttcaat |
434 |
Q |
| |
|
||| |||||||||| |||||||| |||| ||||||||||| | |||||||||||||| ||||||||| |||||||| ||||||||||| ||||||||||| |
|
|
| T |
23253468 |
cggaatttccaatgctcttgcttgctcaaagtatgacgacgaagaaaaagatgagggcgatagagtgctctgaatgtgttgatggatgcgtttcttcaat |
23253567 |
T |
|
| Q |
435 |
catgaatggcaacactaccccttatagtaaaagtgggattcttttgaaagggaggtcattgatttatgaatgtggtccattttgtag |
521 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||| |||||||| |
|
|
| T |
23253568 |
cataaatggcaacactaccccttatagtaaaagtgggattcttttgaaagggatgtcgttgatttatgaatgcggtcctttttgtag |
23253654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0376 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: scaffold0376
Description:
Target: scaffold0376; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 35 - 521
Target Start/End: Complemental strand, 9396 - 8910
Alignment:
| Q |
35 |
ctactagtagtaaggtttttgtttatgatggcttgtataagataattgaattttggtttgaaaaaggtatatctgggtttggtgtttataagtttaagct |
134 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| | ||| ||||| ||||| ||| |||||| ||| |||||||||||||| | | |
|
|
| T |
9396 |
ctactactagtaaggtttttgtttatgatggcttgtataagataactaaatattggtgggaaaatggtgaatctggttttcgtgtttataagtttttgtt |
9297 |
T |
|
| Q |
135 |
atcaagggttcaaggtcaacctaagatgggtagtatgatccttaaggaggccagtatgcttatgagaggccatttatgtgataatcatatgtatgtcctt |
234 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||||| |||| || ||||||||| || ||| || |||||| |||| ||||||||| || |
|
|
| T |
9296 |
atcaagggttaaaggtcaacctaagatcggtagtatgatccttgaggaagctcgtatgcttaagataggtcaattatgttctaattctatgtatgttatt |
9197 |
T |
|
| Q |
235 |
tctgatgatatttcaaatgggaaggagaatattggtgtgaggctatataatgacattgatagtgatctctatcctatgcaatttgagtatctcccgaagg |
334 |
Q |
| |
|
||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
9196 |
tctcatgatatttccaatgggaaggagaatattggtgtgagtttatataatgacattgataatgatcaatatcctatgcaattcgagtatctcccgaagg |
9097 |
T |
|
| Q |
335 |
cggcatttccaatgttcttgcttcctcatagtatgacgacaacgaaaaagatgagggtgatagagtgttctgaatgcgttgatggatgtgtttcttcaat |
434 |
Q |
| |
|
| || ||||| ||| || | ||||| || ||||| |||| | | || ||||| || |||||||||||||| |||||||||||| |||| ||||| |
|
|
| T |
9096 |
ctgcttttccgcaattcgtgttgcctcagagcatgacaacaagggagtcgaggagggcgaaagagtgttctgaatccgttgatggatgcatttcatcaat |
8997 |
T |
|
| Q |
435 |
catgaatggcaacactaccccttatagtaaaagtgggattcttttgaaagggaggtcattgatttatgaatgtggtccattttgtag |
521 |
Q |
| |
|
|| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||| |||||||| |
|
|
| T |
8996 |
caagaatggcaacacttttccttatagtaaaagtgggattcttctgaaagggaggtcattaatttatgaatgcggtcctttttgtag |
8910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 44 - 136
Target Start/End: Complemental strand, 29750673 - 29750581
Alignment:
| Q |
44 |
gtaaggtttttgtttatgatggcttgtataagataattgaattttggtttgaaaaaggtatatctgggtttggtgtttataagtttaagctat |
136 |
Q |
| |
|
||||||||| |||||||||||| ||||||| ||| |||| | ||||||||| ||| | ||||| ||||| |||||||||| |||||||| |
|
|
| T |
29750673 |
gtaaggtttatgtttatgatggattgtataggattgttgattgttggtttgatgtaggaaagtctggttttggagtttataagtataagctat |
29750581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University