View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9670_low_1 (Length: 693)
Name: NF9670_low_1
Description: NF9670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9670_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-156; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 321 - 675
Target Start/End: Complemental strand, 25157944 - 25157583
Alignment:
| Q |
321 |
atatctatcttcggctgttgcgaatacgtattaaacgtaatctgcaacttcattgtggtcgtagcaatctttgctttcttctcatggcttatcatacacc |
420 |
Q |
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| T |
25157944 |
atatctatcttcggctgatgcgaatatgtattaaacgtaatctgcaacttcaatgttgtcgtagcaatctttgctttcttcttatggcttatcatacatc |
25157845 |
T |
|
| Q |
421 |
ctaactacgtcaaattcaccgcaacagacgcatcccttactcaattcaatttcaaaaacaacattacacttcactatgatctcgctctcaatatcatgat |
520 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
25157844 |
ctaactacgtcaaattcaccgcaacagacgcatcccttactcagtttaatttcaaaaacaacattacatttcactatgatctcgctctcaacatcatgat |
25157745 |
T |
|
| Q |
521 |
c-------cgaaacactaattgaagagttggtatctattatgataacatcgaaacccttgtgttttataaagatgttaggtttggttctcaaaccctagg |
613 |
Q |
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| T |
25157744 |
ccgaattccgaaaccctaatcgaagagttggtatctattatgataacatcgaaacccttgtgttttataaagatgttaggtttggttctcaaaccctagg |
25157645 |
T |
|
| Q |
614 |
aacattctttcaacgtcataaaaacacgagtttcttgagcccaacttttagcggtcaacaat |
675 |
Q |
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| T |
25157644 |
aacattttttcaacgtcataaaaacacgagtttcttgaacccaacttttagcggtcaacaat |
25157583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 39 - 259
Target Start/End: Complemental strand, 25158196 - 25157973
Alignment:
| Q |
39 |
gcaagttacgcaatta---gtacatacattcctttatatatttttgttcaatctttacttcacatcaataactttaccaactagaaaatttgaatcaaat |
135 |
Q |
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| T |
25158196 |
gcaagttacgcaattattagtacataaattcctttatatatttttgttcaatctttacttcacatcaataactttaccaactagaaaacttgaatcaaat |
25158097 |
T |
|
| Q |
136 |
tcttctcttttccaaagaaaaacatggccagtattcactagacatactccagttcttccattttgcggccgaatccctccggcttacaaagtgatgacga |
235 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
25158096 |
tcttctcttttccaaagaaaaacatggctagtattcactacacatactccagttcttccattttgcagccgaatccctccggcctacaaagtgatgacga |
25157997 |
T |
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| Q |
236 |
tgacaactgctcctgctgcaaatg |
259 |
Q |
| |
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|||| ||||||||||||||||||| |
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| T |
25157996 |
tgacgactgctcctgctgcaaatg |
25157973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 455 - 618
Target Start/End: Complemental strand, 25166003 - 25165840
Alignment:
| Q |
455 |
ccttactcaattcaatttcaaaaacaacattacacttcactatgatctcgctctcaatatcatgatccgaaacactaattgaagagttggtatctattat |
554 |
Q |
| |
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|||||||||||||||||||| |||||||| |||||| |||| |||| ||||||||||||| |||||||||| |||| ||| ||||||||||| || |
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| T |
25166003 |
ccttactcaattcaatttcacaaacaacaacacacttaactacaatcttgctctcaatatcacgatccgaaaccctaacagaatagttggtatctgctac |
25165904 |
T |
|
| Q |
555 |
gataacatcgaaacccttgtgttttataaagatgttaggtttggttctcaaaccctaggaacat |
618 |
Q |
| |
|
|||||||||||||| ||| ||||| |||||||||||||||| |||||||| ||||||||||| |
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| T |
25165903 |
gataacatcgaaacagttgccttttacaaagatgttaggtttgcttctcaaatcctaggaacat |
25165840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 530 - 595
Target Start/End: Complemental strand, 25164585 - 25164520
Alignment:
| Q |
530 |
taattgaagagttggtatctattatgataacatcgaaacccttgtgttttataaagatgttaggtt |
595 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
25164585 |
taattgaagagttggtatctattatgataacatcgaaacacttgtgttttataaggatgttaggtt |
25164520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 428 - 651
Target Start/End: Complemental strand, 25170246 - 25170023
Alignment:
| Q |
428 |
cgtcaaattcaccg-caacagacgcatcccttactcaattcaatttcaaaaacaacattacacttcactatgatctcgctctcaatatcatgatccgaaa |
526 |
Q |
| |
|
|||||||||||||| |||| || ||| ||||||| ||||||||||| || | | || ||||||||||| ||||||||||| || ||| | | || || |
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| T |
25170246 |
cgtcaaattcaccgtcaac-gatgcaacccttacgcaattcaattttaatgaaaccaacacacttcactacgatctcgctcttaacgtcacggttcgtaa |
25170148 |
T |
|
| Q |
527 |
cactaattgaagagttggtatctattatgataacatcgaaacccttgtgttttataaagatgttaggtttggttctcaaaccctaggaacattctttcaa |
626 |
Q |
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| ||||| ||||||||||||| || ||||| | ||| ||||| | | ||||||||| |||||| ||||| |||||||||||| | ||||||||| |
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| T |
25170147 |
ccctaatcgaagagttggtatttactatgacaccattgaaacgatggcgttttataaggatgttcagtttgcgaatcaaaccctagggagattctttcag |
25170048 |
T |
|
| Q |
627 |
cgtcataaaaacacgagtttcttga |
651 |
Q |
| |
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| |||||| || |||||||| |||| |
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| T |
25170047 |
catcataagaatacgagttttttga |
25170023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 25158280 - 25158244
Alignment:
| Q |
11 |
aagcagagacacagttgcataaatagaggcaagttac |
47 |
Q |
| |
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|||||||||||||||| |||||||||||| ||||||| |
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| T |
25158280 |
aagcagagacacagttacataaatagagggaagttac |
25158244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 5e-33; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 450 - 634
Target Start/End: Original strand, 49494057 - 49494241
Alignment:
| Q |
450 |
gcatcccttactcaattcaatttcaaaaacaacattacacttcactatgatctcgctctcaatatcatgatccgaaacactaattgaagagttggtatct |
549 |
Q |
| |
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||||| ||||||||||||||||||| ||| |||| |||||||| |||||||| | ||||| ||| ||| ||||| ||||| |||||||| || ||| |
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| T |
49494057 |
gcatcacttactcaattcaatttcacaaataacaacacacttcattatgatctttccgtcaatctcacaatcagaaaccctaatagaagagttagtgtct |
49494156 |
T |
|
| Q |
550 |
attatgataacatcgaaacccttgtgttttataaagatgttaggtttggttctcaaaccctaggaacattctttcaacgtcataa |
634 |
Q |
| |
|
|||| || |||||||||| ||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
49494157 |
attacaatgacatcgaaacactttcattttataaagattttaggtttggttctcaaaccctaggaaaattctttcaacctcataa |
49494241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 450 - 556
Target Start/End: Original strand, 37730276 - 37730382
Alignment:
| Q |
450 |
gcatcccttactcaattcaatttcaaaaacaacattacacttcactatgatctcgctctcaatatcatgatccgaaacactaattgaagagttggtatct |
549 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||| ||| || |||||||||| || |||| ||| | | | |||| ||||| ||||||||||||| |
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| T |
37730276 |
gcatcccttactctattcaatttcacaaacaacaacacatttaactatgatctttctgtcaacatctcggttcaaaaccctaatcaaagagttggtatcg |
37730375 |
T |
|
| Q |
550 |
attatga |
556 |
Q |
| |
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||||||| |
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| T |
37730376 |
attatga |
37730382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 587 - 627
Target Start/End: Original strand, 37731319 - 37731359
Alignment:
| Q |
587 |
tgttaggtttggttctcaaaccctaggaacattctttcaac |
627 |
Q |
| |
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||||||||||||||||||| |||| |||| ||||||||||| |
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|
| T |
37731319 |
tgttaggtttggttctcaatccctgggaaaattctttcaac |
37731359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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