View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9670_low_10 (Length: 435)
Name: NF9670_low_10
Description: NF9670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9670_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 49766206 - 49766633
Alignment:
| Q |
1 |
tagaattagcaactactccctttgatttaccttcacgttgagattcaactcttctgagagtacaatctccaaacccagttgaaattctttcaaagaaatc |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49766206 |
tagaactagcaactactccctttgatttaccttcacgttgagattcaactcttctgagagtacaatctccaaacccagttgaaattctttcaaagaaatc |
49766305 |
T |
|
| Q |
101 |
accagagaagcttctgctaccacatccaacagatctagatcttgaaactttacgttcaaaagaacctgtgttgttgctattaggactgttannnnnnnnn |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49766306 |
accagagaagcttctgctaccacatccaacagatctagatcttgaaactttacgttcaaaagaacctgtgttgttgctattaggactgttatcttcttct |
49766405 |
T |
|
| Q |
201 |
nnnnnnnnaacaataacaatgtcgttctttcttcctaaagaagaacctgaacaacacttttccttaagcttagctgaagcagtagtattactaaagctct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49766406 |
tcttcttcaacaataacaatgtcgttctttcttcctaaagaagaacctgaacaacacttttccttaagcttagctgaagcagtagtattactaaagctct |
49766505 |
T |
|
| Q |
301 |
tggaagaagttgaagattttgaagaatgatagagaaaagaccaaaacccatttctttttcttggactaaaatattcatcatctgcatcaaccatagagtt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49766506 |
tggaagaagttgaagattttgaagaatgatagagaaaagaccaaaacccatttctttttcttggactaaaatattcatcatctgcatcaaccatagagtt |
49766605 |
T |
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| Q |
401 |
actacctcttcttggtgttgcagttgat |
428 |
Q |
| |
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| T |
49766606 |
actacctcttcttggtgttgcagttgat |
49766633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 30 - 156
Target Start/End: Complemental strand, 14138488 - 14138362
Alignment:
| Q |
30 |
ccttcacgttgagattcaactcttctgagagtacaatctccaaacccagttgaaattctttcaaagaaatcaccagagaagcttctgctaccacatccaa |
129 |
Q |
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||||||||||||||||| |||||||| | ||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
14138488 |
ccttcacgttgagattccactcttcttaaggtacaatctccaaacccagttgagattttctcaaagaaatcaccagagaagcttctgctaccacatccaa |
14138389 |
T |
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| Q |
130 |
cagatctagatcttgaaactttacgtt |
156 |
Q |
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| T |
14138388 |
cagatctagatcttgaaaccttacgtt |
14138362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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