View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9670_low_12 (Length: 399)
Name: NF9670_low_12
Description: NF9670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9670_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 144 - 380
Target Start/End: Original strand, 6417497 - 6417735
Alignment:
| Q |
144 |
gcttttcattatcttcatcaacaacctcgaaaattttggcaatgatttgttgcctttcattcatattcctcttcctaacatcaacttccttgtgctgcat |
243 |
Q |
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| T |
6417497 |
gcttttcattatcttcatcaacaaccttgaaaattttggcaatgatttgttgcctttcattcatattcctgttcctaacatcaacttccttgtgctacat |
6417596 |
T |
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| Q |
244 |
tctgtttcctttttggggttgaaaagtttgcatgatacttgtttggtgccttgttctggaag--nnnnnnnncagtgagttgaaaccaagttaggaggaa |
341 |
Q |
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| T |
6417597 |
tctgtttcctttttggggttgaaaagtttgcatgatacttgtttggtgccttgttctggaaggaaaaaaaaacagtgagttgaaaccaagttaggaggaa |
6417696 |
T |
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| Q |
342 |
aacttgagcagtggataaattatgaggggggagggaggg |
380 |
Q |
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| T |
6417697 |
aacttgagcagtggataaattatgaggggggagggaggg |
6417735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 35 - 143
Target Start/End: Original strand, 6417335 - 6417443
Alignment:
| Q |
35 |
ttgcatactttcaaattgatttttgcccttcaaattctccacagatctaatcttagtaggacttttgcaaggtagtcgaatactaattttagttgaaaaa |
134 |
Q |
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| T |
6417335 |
ttgcatactttcaaattgatttttgcccctcaaattctccacagatctaatcttagtaggacttttgcaaggtagtcgaatactaattttagttgaaaaa |
6417434 |
T |
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| Q |
135 |
ttcctacaa |
143 |
Q |
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| T |
6417435 |
ttcctacaa |
6417443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 145 - 237
Target Start/End: Complemental strand, 4494421 - 4494329
Alignment:
| Q |
145 |
cttttcattatcttcatcaacaacctcgaaaattttggcaatgatttgttgcctttcattcatattcctcttcctaacatcaacttccttgtg |
237 |
Q |
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| T |
4494421 |
cttttcattatcttcttcagcaaccttgaaaattttgtcaataatttgttgtctttcattcatatccaatttggtaacatcaacttccttgtg |
4494329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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