View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9670_low_14 (Length: 397)
Name: NF9670_low_14
Description: NF9670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9670_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 19 - 376
Target Start/End: Original strand, 1163776 - 1164134
Alignment:
| Q |
19 |
acaggaaggcagaggaggacgaagaagctgccggtggagtatgaggactctgaatctgatgaggatgcaaagctgtgtgacgccattttcaaacgtgctg |
118 |
Q |
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| T |
1163776 |
acaggaaggcagaggaggacgaagaagctgccggtggagtatgaggaccctgaatctgatgaggatgtaaatctgtgtgacgccattttcaaacgtgctg |
1163875 |
T |
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| Q |
119 |
tcaagagaggtcatgcaaaaatgatagaaatcatagatgccgacatgaagccggagcttgagtttcatgggaatgaga-ttagggaagaagaacttaagc |
217 |
Q |
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| T |
1163876 |
tcaagagaggtcatgccaaaatgatagaaatcatagatgccgacatgaagccggagcttgagtttcatgggaatgagaattagggaaaaagaacttaagc |
1163975 |
T |
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| Q |
218 |
atcgctgcttgatagaacaagcacagaaggagttcatataatgaaatacctagtttataaacataccatgttccgttaatgtcttattaatctgctctgc |
317 |
Q |
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| T |
1163976 |
atcgctgcttgatagaacaagcacagaaggagttcatacaatgaaatacctagtttataaacataccatgttccgttaatgtcttattaatctgcactgc |
1164075 |
T |
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| Q |
318 |
ttcaagaaaaattgcctatgttttcataatgttaataactatactagtgtgttctcctt |
376 |
Q |
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| T |
1164076 |
ttcaagaaaaattgcctatgttttcataatgttaataactatactagtatgttctcctt |
1164134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 40 - 220
Target Start/End: Original strand, 2376006 - 2376186
Alignment:
| Q |
40 |
aagaagctgccggtggagtatgaggactctgaatctgatgaggatgcaaagctgtgtgacgccattttcaaacgtgctgtcaagagaggtcatgcaaaaa |
139 |
Q |
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| T |
2376006 |
aagaagctgctggcggagtatgaggagtctgaatccgatgaggatgtaaagttgtgtgacgccagtttcaaacgtgctgtcaatagaggtcgtgccaaag |
2376105 |
T |
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| Q |
140 |
tgatagaaatcatagatgccgacatgaagccggagcttgagtttcatgggaatgagattagggaagaagaacttaagcatc |
220 |
Q |
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| T |
2376106 |
cgatgaaaatcatagaggccgacatgaagctggagcttgagtttcatgtgaatgagattagggaagaagaacgtaagcatc |
2376186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 40 - 220
Target Start/End: Complemental strand, 2380065 - 2379885
Alignment:
| Q |
40 |
aagaagctgccggtggagtatgaggactctgaatctgatgaggatgcaaagctgtgtgacgccattttcaaacgtgctgtcaagagaggtcatgcaaaaa |
139 |
Q |
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| T |
2380065 |
aagaagctgctggcggagtatgaggagtctgaatccgatgaggatgtaaagttgtgtgacgccagtttcaaacgtgctgtcaatagaggtcgtgccaaag |
2379966 |
T |
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| Q |
140 |
tgatagaaatcatagatgccgacatgaagccggagcttgagtttcatgggaatgagattagggaagaagaacttaagcatc |
220 |
Q |
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| T |
2379965 |
cgatgaaaatcatagaggccgacatgaagctggagcttgagtttcatgtgaatgagattagggaagaagaacgtaagcatc |
2379885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 67 - 230
Target Start/End: Complemental strand, 1524776 - 1524612
Alignment:
| Q |
67 |
tctgaatctgatgaggatgcaaagctgtgtgacgccattttcaaacgtgctgtcaagagaggtcatgcaaaaatgatagaaatcatagatg-ccgacatg |
165 |
Q |
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| T |
1524776 |
tctgaatctgatgaggatgtaaagctgtgtgacaccagtttcaaacgtgctgtcaagagatgtcctgccaaagcgacgaaaatcatagagggccgacatg |
1524677 |
T |
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| Q |
166 |
aagccggagcttgagtttcatgggaatgagattagggaagaagaacttaagcatcgctgcttgat |
230 |
Q |
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| T |
1524676 |
aagctggagcttgagtttcatgggaatgagattagagaaaaagaatgtaagcatcgccgcttgat |
1524612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 295 - 381
Target Start/End: Complemental strand, 1524572 - 1524486
Alignment:
| Q |
295 |
aatgtcttattaatctgctctgcttcaagaaaaattgcctatgttttcataatgttaataactatactagtgtgttctccttgatgt |
381 |
Q |
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| T |
1524572 |
aatgtcttgttaatttgcgttgcttcaagacaaattgcttatgttttcataattttaataactgtactagtatgttctcctttatgt |
1524486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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