View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9670_low_18 (Length: 380)
Name: NF9670_low_18
Description: NF9670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9670_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 9750206 - 9750576
Alignment:
| Q |
1 |
ttcctgcaattgaaagcaatgatgccttccaagctgatagtttctctactattggttgaagatggcaagcttttggtcttcctttaaaaattggctcccc |
100 |
Q |
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| T |
9750206 |
ttcctgcaattgaaagcaatgatgccttccaagccgatagttactctgctattggttgaacatggcaagcttttggtattcctttaaaaattggctcccc |
9750305 |
T |
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| Q |
101 |
taattagttaagtggtaaagagtcaatatagaatcctagtaagttgatgatattttcgagtcttgttggtgagattcctcctgcataaatagttgacttc |
200 |
Q |
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| T |
9750306 |
caaatagttaagtggtaaagagtcaatatagaatcctagtaagttgatgatattttggagtcttgttggtgagattcctcctgcataaatagttgacttc |
9750405 |
T |
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| Q |
201 |
ctgttatttatcacttaaccaacactgttagcatactttgtaaataaatctcacaaagcttctaggctctcaaagttccccttgaaataatgggatggaa |
300 |
Q |
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| T |
9750406 |
atgctatttatcacttaaccaacactattagcatactttgtaaataaatctcacaaagcttctaggctctcaaagttccccttgaaataatgggatggaa |
9750505 |
T |
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| Q |
301 |
cttggctgtttttagatcctgtaatttgcttcacctttccatcatccaccaactttgttatccctatgcta |
371 |
Q |
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| T |
9750506 |
attggctgtttttagatcctgtaatttgcttcacctttccatcatccaccaactttgttatccctatgcta |
9750576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 252
Target Start/End: Original strand, 3564226 - 3564340
Alignment:
| Q |
138 |
agtaagttgatgatattttcgagtcttgttggtgagattcctcctgcataaatagttgacttcctgttatttatcacttaaccaacactgttagcatact |
237 |
Q |
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|||| ||||||||| |||| |||||| |||||||||||||| || | |||||| ||||| |||||| ||||||||| || | |||| |||||||||| |
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| T |
3564226 |
agtaggttgatgatgttttggagtctagttggtgagattccaccagaataaattgttgatttcctgcagcttatcacttgactagcactattagcatact |
3564325 |
T |
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| Q |
238 |
ttgtaaataaatctc |
252 |
Q |
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||||||| ||||||| |
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| T |
3564326 |
ttgtaaacaaatctc |
3564340 |
T |
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