View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9670_low_22 (Length: 352)
Name: NF9670_low_22
Description: NF9670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9670_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 7 - 263
Target Start/End: Complemental strand, 2849626 - 2849368
Alignment:
| Q |
7 |
gaagcagagatttagctactattagataaatatttggtaaggttttgaacttgatggtttattaagtcttccaagtttatcaattttaattttgttcttt |
106 |
Q |
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| T |
2849626 |
gaagccgagatttagctactattagataaatatttggtaaggttttgaacttgttggtttatgaagtcttccaagtttatcaattttaattttgttcttt |
2849527 |
T |
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| Q |
107 |
gtgggattactggagttttcctctgctgtaaggagattatctttattttcaatcaaatccaagttcctatcaaaatattaacatttgatgtatgcaatag |
206 |
Q |
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| T |
2849526 |
gtgggattactggagttttcctctgctgtaaggagattatctttattttcaatcaaatccaagttcctatcaaaatattaacatttgatgtatgcaatag |
2849427 |
T |
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| Q |
207 |
aattgttc--agtagcatcaattaaagaacttgttcatggaaacaattttgctactgat |
263 |
Q |
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| T |
2849426 |
aattgttcagagtagcatcaattaaagaacttgttcatggaaacaattttgctactgat |
2849368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 254 - 312
Target Start/End: Complemental strand, 2848495 - 2848437
Alignment:
| Q |
254 |
tgctactgatagtattttaagtctgtaggcatgaaatgttgcgtaatgcagcatatgtt |
312 |
Q |
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| T |
2848495 |
tgctactgatagtattttaagtctgtaggcatgaaatgttgcgtaatgcagcatatgtt |
2848437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 256
Target Start/End: Original strand, 43099673 - 43099769
Alignment:
| Q |
161 |
aaatccaagttcctatcaaaatattaacatttgatgtatgcaatagaattgttcagtagcatca-attaaagaacttgttcatggaaacaattttgc |
256 |
Q |
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| T |
43099673 |
aaatctaagttcctatcaaaatatttacatttgatgtatattatagcattttttaatagcattagactaaagaacttgatcaaggaaacagttttgc |
43099769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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