View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9670_low_23 (Length: 351)

Name: NF9670_low_23
Description: NF9670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9670_low_23
NF9670_low_23
[»] chr4 (2 HSPs)
chr4 (45-145)||(2023237-2023336)
chr4 (136-225)||(2023100-2023188)
[»] chr2 (1 HSPs)
chr2 (12-44)||(33910609-33910641)


Alignment Details
Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 45 - 145
Target Start/End: Complemental strand, 2023336 - 2023237
Alignment:
Q  45 caggaacaatcaatgcaagaatatttgatatagttaatcaatgcaaaaatctctttacattcaaccattaacactagggctgcacataggtagtatgctt 144  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||    
T  2023336 caggaacaatcaatgcaagaatatttgatatagttaatcaatacaaaaatctctttactttcaaccattaacac-agggctgcacataggtagtgtgctt 2023238  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 136 - 225
Target Start/End: Complemental strand, 2023188 - 2023100
Alignment:
Q  136 agtatgcttatacaaagtgataagctattaattgtacaaataattttatgtgctcatcattgacccgcgcgatagcacgggacgacgatc 225  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||| ||||||||||||||| ||||||    
T  2023188 agtatgcttatacaaagtgataagctattaattgtagaaat-attttatgtgttcatcattgacccgtgcgatagcacgggacaacgatc 2023100  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 44
Target Start/End: Original strand, 33910609 - 33910641
Alignment:
Q  12 agcagagagtttggcagccgaggatccaaatcc 44  Q
    |||||||||||||| ||||||||||||||||||    
T  33910609 agcagagagtttggtagccgaggatccaaatcc 33910641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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