View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9670_low_25 (Length: 349)
Name: NF9670_low_25
Description: NF9670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9670_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 14 - 331
Target Start/End: Complemental strand, 2017678 - 2017361
Alignment:
| Q |
14 |
gatgaacctgaaaaattagcaaaatcatgcacatggctgtggcctcaaatcagttgctgcagctggtagtttttgcggtcttttttgcaaaagcaacaac |
113 |
Q |
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| T |
2017678 |
gatgaacctgaaaaattagcaaaatcatgcacatggctgtggcctcaaatcagttgctgcagctggtagtttttgcggtcttttttgcaaaagcaacaac |
2017579 |
T |
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| Q |
114 |
tcagcaactatctctcccaaactgcacaacaaagtgtggctctgccacaattccctttccatttggaaccaccaaggattgttccttggacaacactttt |
213 |
Q |
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| T |
2017578 |
tcagcaactatctctcccaaactgcacaacaaagtgtggctctgtcacaattccctttccatttggaaccaccaaggattgttccttggacaacactttt |
2017479 |
T |
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| Q |
214 |
ctcataaattgcacctaagcannnnnnnnnnnnnnnnnaacctcaacacatttacctttcctgccacatactaatcaaactgtcctaaacatctcgcttg |
313 |
Q |
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| T |
2017478 |
ctcataaattgcaccaaagcatcttcttcttcttcttcaacctcaacccatatacctttcctgccacatactaatcaaactgtcctaaacatctcgcttg |
2017379 |
T |
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| Q |
314 |
atggtgaactgcgtgttg |
331 |
Q |
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| T |
2017378 |
atggtgaactgcgtgttg |
2017361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 218
Target Start/End: Original strand, 8490478 - 8490566
Alignment:
| Q |
130 |
ccaaactgcacaacaaagtgtggctctgccacaattccctttccatttggaaccaccaaggattgttccttggacaacacttttctcat |
218 |
Q |
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| T |
8490478 |
ccaaactgtccaacaaagtgtggctctgtcactattcccttcccatttggaaccaccaagagttgttctctagacaacacctttctcat |
8490566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 331
Target Start/End: Original strand, 8490588 - 8490667
Alignment:
| Q |
252 |
aacctcaacacatttacctttcctgccacatactaatcaaactgtcctaaacatctcgcttgatggtgaactgcgtgttg |
331 |
Q |
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| T |
8490588 |
aacctcaacagacgtaccattcttgccacagagtaatcaaagtgttctaaacatctcactcgatggtgaactgcatgttg |
8490667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 218
Target Start/End: Original strand, 40577234 - 40577322
Alignment:
| Q |
130 |
ccaaactgcacaacaaagtgtggctctgccacaattccctttccatttggaaccaccaaggattgttccttggacaacacttttctcat |
218 |
Q |
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| T |
40577234 |
ccaaactgtccaacaaagtgtggcaatgtcactattcccttcccatttggaaccaccaaggattgttctctagacaacacctttctcat |
40577322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 226
Target Start/End: Original strand, 40566118 - 40566214
Alignment:
| Q |
130 |
ccaaactgcacaacaaagtgtggctctgccacaattccctttccatttggaaccaccaaggattgttccttggacaacacttttctcataaattgca |
226 |
Q |
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| T |
40566118 |
ccaaattgcccaacaaaatgtggttccgtcaccattccctttccatttggaaccactaagaattgttccctcgacaatacctttctcattaattgca |
40566214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 218
Target Start/End: Original strand, 40570821 - 40570899
Alignment:
| Q |
140 |
caacaaagtgtggctctgccacaattccctttccatttggaaccaccaaggattgttccttggacaacacttttctcat |
218 |
Q |
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| T |
40570821 |
caacaaagtgtggcaatgtcactattcccttcccatttggaaccaccaataattgttctctagacaacacctttctcat |
40570899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 328
Target Start/End: Original strand, 40570921 - 40570997
Alignment:
| Q |
252 |
aacctcaacacatttacctttcctgccacatactaatcaaactgtcctaaacatctcgcttgatggtgaactgcgtg |
328 |
Q |
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| T |
40570921 |
aacctcaacagacgtaccattcttgccacagactaatcaaagtgttctaaacatctcactcgacggtgaactgcgtg |
40570997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 323
Target Start/End: Original strand, 40577344 - 40577415
Alignment:
| Q |
252 |
aacctcaacacatttacctttcctgccacatactaatcaaactgtcctaaacatctcgcttgatggtgaact |
323 |
Q |
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| T |
40577344 |
aacctcaacagaggtaccattcttgccacagactaatcaaagtgttctaaacatctcacttaatggtgaact |
40577415 |
T |
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