View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9670_low_26 (Length: 324)
Name: NF9670_low_26
Description: NF9670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9670_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 17 - 317
Target Start/End: Complemental strand, 50366920 - 50366620
Alignment:
| Q |
17 |
aggaagcatgcttgccctggacaaaccatacattgcaagttctgtagagtgtgatattcaaacaaccgaggaagtttgccttgaatatggaagtgcaaca |
116 |
Q |
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| T |
50366920 |
aggaagcatgcttgccctggacaaaccatacattgcaagttctgtagagtgtgatattcaaacaagtgaggaagtttgccttgaatatggaagtgcaaca |
50366821 |
T |
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| Q |
117 |
caattatatttggtgccttacattcaacatgaagaacaggtgacttaatggatttttgtatgacattactatagtaattgtcatatggagagaaaatact |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50366820 |
caattatatttggtgccttacattcaacatgaagaacaggtgacttaatggatttttgtatgacattactatagtaattgtcatatggagagaaaatact |
50366721 |
T |
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| Q |
217 |
aagcagctctgttgattaggtatgcgtagcattgacaccaaaccgccatcaaggttcaaggcaaatgggttcgtgtaatcccactcagggtcacaggttc |
316 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
50366720 |
aagcagctctgttgattaggtatgtgtagcattgacaccaaaccgccatcaaggttcaaggcaaatgggttcgtgtaatcccactcagggtcccaggttc |
50366621 |
T |
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| Q |
317 |
t |
317 |
Q |
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| T |
50366620 |
t |
50366620 |
T |
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