View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9670_low_28 (Length: 286)
Name: NF9670_low_28
Description: NF9670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9670_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 276
Target Start/End: Original strand, 47927943 - 47928201
Alignment:
| Q |
18 |
atatattatatagttaatcaatatctgatttcaagcacataaaggagggtttcttccagctccaccaaagtagaatacaggatcttttccatatggagca |
117 |
Q |
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| T |
47927943 |
atatattatatagttaatcaatatctgatttcaagcacataaaggagggtttcttccagctcctccaaagtagaatacaggatcttttccatatggagcg |
47928042 |
T |
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| Q |
118 |
tcattgagggcactgtaacaatatggttctgcagcatgtgtacttacaaatgatggatacttaagagcttgtgaataatctttaattctcacactaccca |
217 |
Q |
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| T |
47928043 |
tcattgagggcactgtaacaatatggttctgcagcatgtgtacttacaaatgatggatacttaagagcttgtgaataatctttaattctcacactaccca |
47928142 |
T |
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| Q |
218 |
tgtaacatgcggccccaaatcgaccacttgctgcctctccactacccatctgtgctcct |
276 |
Q |
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| T |
47928143 |
tgtaacatgcggccccaaatcgaccacttgctgcatctccactacccatctgtgttcct |
47928201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 72 - 237
Target Start/End: Original strand, 47918235 - 47918400
Alignment:
| Q |
72 |
tccagctccaccaaagtagaatacaggatcttttccatatggagcatcattgagggcactgtaacaatatggttctgcagcatgtgtacttacaaatgat |
171 |
Q |
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| T |
47918235 |
tccagcacctccaaaatagaatacaggatcttttccatatggagcatcattgaaggcactgtaacaatatggttctatagcatgtgtacttacaaatgat |
47918334 |
T |
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| Q |
172 |
ggatacttaagagcttgtgaataatctttaattctcacactacccatgtaacatgcggccccaaat |
237 |
Q |
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| T |
47918335 |
gggtacttaagtgcttgcgaattatctttgattctcacaccacccatgtaacatgcaaccccaaat |
47918400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 82 - 276
Target Start/End: Original strand, 47935441 - 47935635
Alignment:
| Q |
82 |
ccaaagtagaatacaggatcttttccatatggagcatcattgagggcactgtaacaatatggttctgcagcatgtgtacttacaaatgatggatacttaa |
181 |
Q |
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| T |
47935441 |
ccaaaataaaatacaggatcttgtccatatggagcttcattgagggcactgtaacaatatggttctgcagcataagtagttacatatgctggatatttga |
47935540 |
T |
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| Q |
182 |
gagcttgtgaataatctttaattctcacactacccatgtaacatgcggccccaaatcgaccacttgctgcctctccactacccatctgtgctcct |
276 |
Q |
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| T |
47935541 |
gagcttttgaataatccttaattctaacattgcttatgtaacatgcgaacccaaatcgaccacttgcttcttctccactacccatctgtgttcct |
47935635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 89 - 276
Target Start/End: Original strand, 47946590 - 47946777
Alignment:
| Q |
89 |
agaatacaggatcttttccatatggagcatcattgagggcactgtaacaatatggttctgcagcatgtgtacttacaaatgatggatacttaagagcttg |
188 |
Q |
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|||| |||||||||||||||||| || |||| ||||||||||||||||| || |||||||| |||| ||||||||||||| ||||||||| |||| || |
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| T |
47946590 |
agaagacaggatcttttccatattgaacatcgttgagggcactgtaacagtaaggttctgctgcatatgtacttacaaattgtggatacttgagagtttc |
47946689 |
T |
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| Q |
189 |
tgaataatctttaattctcacactacccatgtaacatgcggccccaaatcgaccacttgctgcctctccactacccatctgtgctcct |
276 |
Q |
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| T |
47946690 |
tgaataatccttaattctcacatttgtcatgtaacatgcgaacccaaatcgaccacttgctgcttctccactacccatttgtgttcct |
47946777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 82 - 209
Target Start/End: Original strand, 47909079 - 47909206
Alignment:
| Q |
82 |
ccaaagtagaatacaggatcttttccatatggagcatcattgagggcactgtaacaatatggttctgcagcatgtgtacttacaaatgatggatacttaa |
181 |
Q |
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|||||| |||| ||||| |||||||||||||||||| ||| |||||||||||||| | || ||| |||||||||| |||| ||| ||| ||||||| |
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| T |
47909079 |
ccaaagaagaacacagggtcttttccatatggagcaatatttagggcactgtaacactcaggctctccagcatgtgtggttacgaattgtgggtacttaa |
47909178 |
T |
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| Q |
182 |
gagcttgtgaataatctttaattctcac |
209 |
Q |
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| T |
47909179 |
gagcttgtgagtaatctttaattctcac |
47909206 |
T |
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