View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9670_low_3 (Length: 533)
Name: NF9670_low_3
Description: NF9670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9670_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 46 - 516
Target Start/End: Complemental strand, 2017756 - 2017281
Alignment:
| Q |
46 |
tagcattacgtacaacaagaagaaatagattaaatacttnnnnnnnnnntccaatgatttgtaaaagttataa-----gatgaacctgaaaaattagcaa |
140 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2017756 |
tagcattacgtacaacaagaagaaatagattaaatacttaaaaaaaaaatccaatgatttgtaaaagttataacgaacgatgaacctgaaaaattagcaa |
2017657 |
T |
|
| Q |
141 |
aatcatgcacatggctgtggcctcaaatcagttgctgcagctggtagtttttgcggtcttttttgcaaaagcaacaactcagcaactatctctcccaaac |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2017656 |
aatcatgcacatggctgtggcctcaaatcagttgctgcagctggtagtttttgcggtcttttttgcaaaagcaacaactcagcaactatctctcccaaac |
2017557 |
T |
|
| Q |
241 |
tgcacaacaaagtgtggctctgccacaattccctttccatttggaaccaccaaggattgttccttggacaacacttttctcataaattgcacctaagcan |
340 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2017556 |
tgcacaacaaagtgtggctctgtcacaattccctttccatttggaaccaccaaggattgttccttggacaacacttttctcataaattgcaccaaagcat |
2017457 |
T |
|
| Q |
341 |
nnnnnnnnnnnnnnnnaacctcaacacatttacctttcctgccacatactaatcaaactgtcctaaacatctcgcttgatggtgaactgcgtgttgcatg |
440 |
Q |
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| T |
2017456 |
cttcttcttcttcttcaacctcaacccatatacctttcctgccacatactaatcaaactgtcctaaacatctcgcttgatggtgaactgcgtgttgcatg |
2017357 |
T |
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| Q |
441 |
gccagtagccagcgattgctacgacgaaaagagcatacaggtgaaccaatcattttggggtatcagaatgacacat |
516 |
Q |
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| T |
2017356 |
gccagtagccagcgattgctacgacgaaaagagcatacaggtgaaccaatcattttggggtatcagaatgacacat |
2017281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 235 - 461
Target Start/End: Original strand, 40577234 - 40577448
Alignment:
| Q |
235 |
ccaaactgcacaacaaagtgtggctctgccacaattccctttccatttggaaccaccaaggattgttccttggacaacacttttctcataaattgcacct |
334 |
Q |
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| T |
40577234 |
ccaaactgtccaacaaagtgtggcaatgtcactattcccttcccatttggaaccaccaaggattgttctctagacaacacctttctcatcgattgcaaca |
40577333 |
T |
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| Q |
335 |
aagcannnnnnnnnnnnnnnnnaacctcaacacatttacctttcctgccacatactaatcaaactgtcctaaacatctcgcttgatggtgaactgcgtgt |
434 |
Q |
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|| || |||||||||| | |||| ||| ||||||| |||||||||| ||| ||||||||||| ||| |||||||||| | || |
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| T |
40577334 |
aaacatcttc------------aacctcaacagaggtaccattcttgccacagactaatcaaagtgttctaaacatctcacttaatggtgaacttcacgt |
40577421 |
T |
|
| Q |
435 |
tgcatggccagtagccagcgattgcta |
461 |
Q |
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| T |
40577422 |
tgcatggccagtagccagctattgcta |
40577448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 357 - 461
Target Start/End: Original strand, 40570921 - 40571025
Alignment:
| Q |
357 |
aacctcaacacatttacctttcctgccacatactaatcaaactgtcctaaacatctcgcttgatggtgaactgcgtgttgcatggccagtagccagcgat |
456 |
Q |
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|||||||||| | |||| ||| ||||||| |||||||||| ||| ||||||||||| || || ||||||||||||| ||||||||||||||| || ||| |
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| T |
40570921 |
aacctcaacagacgtaccattcttgccacagactaatcaaagtgttctaaacatctcactcgacggtgaactgcgtgctgcatggccagtagcaagtgat |
40571020 |
T |
|
| Q |
457 |
tgcta |
461 |
Q |
| |
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||||| |
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|
| T |
40571021 |
tgcta |
40571025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 390 - 463
Target Start/End: Original strand, 40566267 - 40566340
Alignment:
| Q |
390 |
taatcaaactgtcctaaacatctcgcttgatggtgaactgcgtgttgcatggccagtagccagcgattgctacg |
463 |
Q |
| |
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| T |
40566267 |
taatcaaaatgtcctaaatatctcactcaatggtgaattgcacgttgcatggccagtagccagcgattgctacg |
40566340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 235 - 331
Target Start/End: Original strand, 40566118 - 40566214
Alignment:
| Q |
235 |
ccaaactgcacaacaaagtgtggctctgccacaattccctttccatttggaaccaccaaggattgttccttggacaacacttttctcataaattgca |
331 |
Q |
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| T |
40566118 |
ccaaattgcccaacaaaatgtggttccgtcaccattccctttccatttggaaccactaagaattgttccctcgacaatacctttctcattaattgca |
40566214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 323
Target Start/End: Original strand, 40570821 - 40570899
Alignment:
| Q |
245 |
caacaaagtgtggctctgccacaattccctttccatttggaaccaccaaggattgttccttggacaacacttttctcat |
323 |
Q |
| |
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|||||||||||||| || ||| |||||||| ||||||||||||||||| ||||||| | |||||||| |||||||| |
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| T |
40570821 |
caacaaagtgtggcaatgtcactattcccttcccatttggaaccaccaataattgttctctagacaacacctttctcat |
40570899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 388 - 461
Target Start/End: Original strand, 40595654 - 40595727
Alignment:
| Q |
388 |
actaatcaaactgtcctaaacatctcgcttgatggtgaactgcgtgttgcatggccagtagccagcgattgcta |
461 |
Q |
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| T |
40595654 |
actaatcaacgtgtcttaaatatatcacttaatggtgaactgcatgttgcatggccagtagccagacattgcta |
40595727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 452
Target Start/End: Original strand, 40600307 - 40600359
Alignment:
| Q |
400 |
gtcctaaacatctcgcttgatggtgaactgcgtgttgcatggccagtagccag |
452 |
Q |
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| T |
40600307 |
gtcctaaatatctcactcaatggtgaattgcgtgtcgcatggccagtagccag |
40600359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 235 - 323
Target Start/End: Original strand, 8490478 - 8490566
Alignment:
| Q |
235 |
ccaaactgcacaacaaagtgtggctctgccacaattccctttccatttggaaccaccaaggattgttccttggacaacacttttctcat |
323 |
Q |
| |
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|||||||| |||||||||||||||||| ||| |||||||| |||||||||||||||||| |||||| | |||||||| |||||||| |
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| T |
8490478 |
ccaaactgtccaacaaagtgtggctctgtcactattcccttcccatttggaaccaccaagagttgttctctagacaacacctttctcat |
8490566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 357 - 461
Target Start/End: Original strand, 8490588 - 8490692
Alignment:
| Q |
357 |
aacctcaacacatttacctttcctgccacatactaatcaaactgtcctaaacatctcgcttgatggtgaactgcgtgttgcatggccagtagccagcgat |
456 |
Q |
| |
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| T |
8490588 |
aacctcaacagacgtaccattcttgccacagagtaatcaaagtgttctaaacatctcactcgatggtgaactgcatgttgcatggccaataggcagtgat |
8490687 |
T |
|
| Q |
457 |
tgcta |
461 |
Q |
| |
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||||| |
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|
| T |
8490688 |
tgcta |
8490692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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