View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9670_low_35 (Length: 270)

Name: NF9670_low_35
Description: NF9670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9670_low_35
NF9670_low_35
[»] chr2 (2 HSPs)
chr2 (186-259)||(45507250-45507323)
chr2 (187-259)||(45512096-45512168)
[»] chr7 (1 HSPs)
chr7 (187-259)||(42539323-42539395)
[»] chr3 (4 HSPs)
chr3 (187-259)||(1330159-1330230)
chr3 (148-186)||(36179192-36179230)
chr3 (62-98)||(36178921-36178957)
chr3 (18-47)||(36178893-36178922)


Alignment Details
Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 186 - 259
Target Start/End: Complemental strand, 45507323 - 45507250
Alignment:
Q  186 atgtgagaagagcagaataattgaggaataaaagagagaacttttagcagaaaaagactatagctatactaaca 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45507323 atgtgagaagagcagaataattgaggaataaaagagagaacttttagcagaaaaagactatagctatactaaca 45507250  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 45512168 - 45512096
Alignment:
Q  187 tgtgagaagagcagaataattgaggaataaaagagagaacttttagcagaaaaagactatagctatactaaca 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45512168 tgtgagaagagcagaataattgaggaataaaagagagaacttttagcagaaaaagactatagctatactaaca 45512096  T

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Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 42539323 - 42539395
Alignment:
Q  187 tgtgagaagagcagaataattgaggaataaaagagagaacttttagcagaaaaagactatagctatactaaca 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42539323 tgtgagaagagcagaataattgaggaataaaagagagaacttttagcagaaaaagactatagctatactaaca 42539395  T

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Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 1330230 - 1330159
Alignment:
Q  187 tgtgagaagagcagaataattgaggaataaaagagagaacttttagcagaaaaagactatagctatactaaca 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1330230 tgtgagaagagcagaataattgaggaataaaagagagaacttttagcag-aaaagactatagctatactaaca 1330159  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 186
Target Start/End: Original strand, 36179192 - 36179230
Alignment:
Q  148 agtactatttagctccctgcacctatatggtatggtata 186  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  36179192 agtactatttagctccgtgcacctatatggtatggtata 36179230  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 98
Target Start/End: Original strand, 36178921 - 36178957
Alignment:
Q  62 tgcttccatttttgtgaaggaaagaacagggacagtt 98  Q
    ||||||||||||||||||||||||||| |||||||||    
T  36178921 tgcttccatttttgtgaaggaaagaacggggacagtt 36178957  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 36178893 - 36178922
Alignment:
Q  18 tgaggatgggtcaaatttgcttttagagtg 47  Q
    ||||||||||||||||||||||||||||||    
T  36178893 tgaggatgggtcaaatttgcttttagagtg 36178922  T

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