View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9670_low_36 (Length: 268)
Name: NF9670_low_36
Description: NF9670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9670_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 258
Target Start/End: Original strand, 34674141 - 34674384
Alignment:
| Q |
17 |
aattttaaatgctagattaagaactaattgagttaggacatat--aaagaaaagcaattttctactaacatatctatagtgcgcaagataagggcccttt |
114 |
Q |
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| T |
34674141 |
aattttaaatgctagattaagaactaattgagttaggacatatataaagaaaagcaactttctactaacatatgtatagtgcgcaagataagggctcttt |
34674240 |
T |
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| Q |
115 |
ttctaaatgttatcagaagagaccaatattgagtacgtccttatattaaatttcacggcactcatttgttatcaaaatgtagnnnnnnnnttaaaatatt |
214 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
34674241 |
ttctaaatgttatcagaagagaccaatactgagtacgtccttatattaaatttcacggcactcatttgttatcaaaatgttgaaaaaaaattaaaatatt |
34674340 |
T |
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| Q |
215 |
ataaggtcctattcatgacctaattcattcctctaatgtctctg |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34674341 |
ataaggtcctattcatgacctaattcattcctctaatgtctctg |
34674384 |
T |
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