View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9670_low_4 (Length: 532)
Name: NF9670_low_4
Description: NF9670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9670_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 19 - 474
Target Start/End: Original strand, 37288303 - 37288752
Alignment:
| Q |
19 |
ctgtaactatatatgattctttgctttgagtcttcaaagttcaatcacatgctttgatatacatcataattaatgttaagaatctttgcaacttgaaacc |
118 |
Q |
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| T |
37288303 |
ctgtaactatatatgattctttgctttgagtcttcaaagttcaatcacatgctttgatatacatcataattaatgtta-gaatctttgcaacttgaaacc |
37288401 |
T |
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| Q |
119 |
tttttatacatgatgcaagtttagctttgaggttttcttagatactcttacttgttttagaggtatttattttacagtttattaattcnnnnnnncttat |
218 |
Q |
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| T |
37288402 |
tttttatacatgatgcaagtttagctttgaggttttcttagatactcttacttgttttagaggtatttattttacagtttattaattctttttttcttat |
37288501 |
T |
|
| Q |
219 |
attacaaatttaatatgcatgtgggtcttcactttgctaccacacctacttattaatactgtttcagcttttgtcttcaatttggaatatctcaccttga |
318 |
Q |
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| T |
37288502 |
attacaaatttaatatgcatgtgggtcttcactttgctaccacacctacttattaatactgtttcagcttttgtcttcactttggaatatctcaccttga |
37288601 |
T |
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| Q |
319 |
ttggtttatatatatatggcttcatcataatttatttataagctcatatttaatacatgaaataaagtctttgatcatgctcacggcttannnnnnnata |
418 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
37288602 |
ttggtt----tatatatggcttcatcataatttatttataagctcatatttaatacatgaaataaagtctttgatcatgctcatggcttatttttttata |
37288697 |
T |
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| Q |
419 |
tccaagtatgtcggtatctaagttttcaagtctaaaatttcttattctatgatatg |
474 |
Q |
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| T |
37288698 |
tccaagtatgtc-gtatctaagttttcaagtctaaaatttcttattctatgatatg |
37288752 |
T |
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