View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9670_low_45 (Length: 229)
Name: NF9670_low_45
Description: NF9670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9670_low_45 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 5 - 229
Target Start/End: Original strand, 36733685 - 36733911
Alignment:
| Q |
5 |
caaataagacaataaggaattgaagagatagaactttgcgcaattattcatgaaaaataccatctaaagtttaacaatttcacaaggcagcacactttct |
104 |
Q |
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| T |
36733685 |
caaataagacaataaggaattgaagagataggactttgcgcaattattcatgaaaaataccatctaaagtttaacaatttcacaaggcatcacactttct |
36733784 |
T |
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| Q |
105 |
tttgttgttttgtttcctaaagtgctagggcaaccttaattatcctttttagttcacgcgcaattatg--nnnnnnnnacaatttcacaaggctgtgcca |
202 |
Q |
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| T |
36733785 |
tttgttgttttgtttcctaaagtgctagggcaaccttaattatcctttttagttcacgcgcaattatgttttttttttacaatttcacaaggctgtgcca |
36733884 |
T |
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| Q |
203 |
acagggcgcacgatcgtgctacccaat |
229 |
Q |
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| T |
36733885 |
acagggcgcacgatcgtgctacccaat |
36733911 |
T |
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