View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9670_low_48 (Length: 228)
Name: NF9670_low_48
Description: NF9670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9670_low_48 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 33303028 - 33302802
Alignment:
| Q |
1 |
ttatctacaatgttctatagcatatattctattctacttcattaatcatgatagaatagttactactattattattccctctaaggttgtgttgggtgga |
100 |
Q |
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| T |
33303028 |
ttatctacaatgttctatagcatatattctattctacttcattaatcatgatagaatagttactactattattattccctctaaggttgtgttgggtgga |
33302929 |
T |
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| Q |
101 |
ctagannnnnnnaccgtcattcaaggtttgttttgtgatattctcaaatatgaattattggttgtgttttgaaatgggagaattaaggtgatatttgtca |
200 |
Q |
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| T |
33302928 |
ctagatttttt-accgtcattcaaggtttgttttgtgatattctcaaatatgaattattggttgtgttttgcaatgggagaattaaggtgatatttgtca |
33302830 |
T |
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| Q |
201 |
tgaaaaattagattgaaaggagatagct |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
33302829 |
tgaaaaattagattgaaaggagatagct |
33302802 |
T |
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