View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9670_low_7 (Length: 443)
Name: NF9670_low_7
Description: NF9670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9670_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 12 - 430
Target Start/End: Complemental strand, 44452901 - 44452483
Alignment:
| Q |
12 |
agagatgatgacatttactatatgcactaacatcattaaaattgggaaacagttgatttgtcaaaccggaagatttactctcttcagaaccatcttctga |
111 |
Q |
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| T |
44452901 |
agagatgatgacatttactatatgcactaacatcattaaaattgggaaacagttgatttgtcaaaccggaagatttactctcttcagaaccatcttctga |
44452802 |
T |
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| Q |
112 |
ccttgaaacagctgtttatcatcnnnnnnngattgtcaatagaagccagactatgatatatacatatcaagttagtcgactttgccacatgaaaatttca |
211 |
Q |
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| T |
44452801 |
ccttgaaacagctgtttatcatcaaaaaaagattgtcaatagaagccagactatgatatatacatatcaagttagtcgactttgccacatgaaaatttca |
44452702 |
T |
|
| Q |
212 |
attgctttatgtagtaatttaacagtttcagttttcagaaatctaatgatgaaaatgtcagtttatacgcacttttgattgtgtgaaccagatattgaat |
311 |
Q |
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| T |
44452701 |
attgctttatgtagtaatttaacagtttcagttttcggaaatctaatgatgaaaatgtcagtttatacgcacttttgattgtgtgaaccagatattgaat |
44452602 |
T |
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| Q |
312 |
gcatgaacttatcagtattttccccatagaatcccatattgacataaaccaacagaaccttgataaaaaataaccgaattttgaaaattaaacaatgtgg |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44452601 |
gcatgaacttatcagtattttccccatagaatcccatattgacataaaccaacagaaccttgataaaaaataaccgaattttgaaaattaaacaatgtgg |
44452502 |
T |
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| Q |
412 |
actggtatatgatcaagtt |
430 |
Q |
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| T |
44452501 |
actggtatatgatcaagtt |
44452483 |
T |
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