View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9670_low_9 (Length: 442)
Name: NF9670_low_9
Description: NF9670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9670_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 22 - 430
Target Start/End: Original strand, 38284558 - 38284971
Alignment:
| Q |
22 |
tgactatatctttactacattttcgcataaaaagtataattgtaacagatgaaagagagtggcaaagacagtgaaatccaaggtaatgtcacgatcttca |
121 |
Q |
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| T |
38284558 |
tgactatatctttactacattttcgcataaaaagtataattgtaacagatgaaagagagtggcaaagacagtgaaatccaaggtaatgtcacgatcttca |
38284657 |
T |
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| Q |
122 |
ggtcaatatgagtgcacacaaacatgtgcaactgcaatgtaatatcttccatatttttccaaaagatgataagttaagttgtaaggggcacttacaccac |
221 |
Q |
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| T |
38284658 |
ggtcaatatgagtgcacacaaacatgtgcaactgcaatgtaatatcttccatatttttccaaaagatgataagttaagttgtaaggggcacttacaccac |
38284757 |
T |
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| Q |
222 |
tcagttaagccaacaagccaaaatacaaaattatcatatagcatctcaacccttttaatttggactcaattattggatttgatagtagatagagggaagg |
321 |
Q |
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| T |
38284758 |
tcagttaagccaacaagccaaaatacaaaattatcatatagcatctcaacccttttaatttggactcaattattggatttgatagtagatagagggaagg |
38284857 |
T |
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| Q |
322 |
agaaagtgact-----tggaacatggctcatagctcacacaggacccagtgcaataaaatacacaaaatcataagaaacctctcaaatgtgggtccattt |
416 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38284858 |
agaaagtgactggcactggaacatggctcatagctcacacaggacccagtgcaataaaatacacaaaatcataagaaacctctcaaatgtgggtccattt |
38284957 |
T |
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| Q |
417 |
gatcctgatgtcca |
430 |
Q |
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| T |
38284958 |
gatccttatgtcca |
38284971 |
T |
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