View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9671_high_3 (Length: 305)
Name: NF9671_high_3
Description: NF9671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9671_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 4132936 - 4133224
Alignment:
| Q |
1 |
tacactccacacagataacaccaagatgcatttccaatttcttgtatatcccttgttgctaattccacaaatctggaagcaacatatgttgcaacggttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4132936 |
tacactccacacagataacaccaagatgcatttccaatttcttgtatatcccttgttgctaattccacaaatctggaagcaacatatgttgcaatggttt |
4133035 |
T |
|
| Q |
101 |
agatagccacaccatcagacccttccgattcaaattttactgctactaaccaattagttcctcacatcagtccacttccacaacaccttctagctaataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4133036 |
agatagccacaccatcagacccttccgattcaaattttactgctactaaccaattagttcctcacatcagtccacttccacaacaccttctagctaataa |
4133135 |
T |
|
| Q |
201 |
caacttgacactttgataatattaccacacgcctttcgatagttcataaaccaatac-aattcatggcttatccacagaccgctcattt |
288 |
Q |
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| T |
4133136 |
caacttgacactttgataatattaccacacgcctttcgatagttcataaaccaatacaaattcatggcttatccacagaccgctcattt |
4133224 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 43142192 - 43142144
Alignment:
| Q |
3 |
cactccacacagataacaccaagatgcatttccaatttcttgtatatcc |
51 |
Q |
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|||| |||||||||| ||||||||| | |||||||||||||||||||| |
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| T |
43142192 |
cactacacacagatagtaccaagatgtaattccaatttcttgtatatcc |
43142144 |
T |
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