View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9671_high_5 (Length: 242)
Name: NF9671_high_5
Description: NF9671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9671_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 25195056 - 25194833
Alignment:
| Q |
1 |
taaaagagtatgtattgaaacaaacacaccaaggttggttatccgagttaacaaaaattggcctacatatgaggaagagagcaattttatgatccactat |
100 |
Q |
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| T |
25195056 |
taaaagagtatgtattgaaacaaacacactaaggttggttatccgagttaacaaaaattgacctacatatgaggaagagagcaattttatgatccactat |
25194957 |
T |
|
| Q |
101 |
tgatgagtctttataagatatacaatgaaattataagaaattaatcaagagctcttcaaaagcaaacccaaatttcaactatttttcctaatctctcaag |
200 |
Q |
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|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25194956 |
caatgaatctttataagatatacaaagaaattataagaaattaatcaagagctcttcaaaaacaaacccaaatttcaactatttttcctaatctctcaag |
25194857 |
T |
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| Q |
201 |
ccataagaagatcataagagaaat |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
25194856 |
ccataagaagatcataagagaaat |
25194833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 176
Target Start/End: Complemental strand, 32049698 - 32049622
Alignment:
| Q |
103 |
atgagtctttataagatatacaatgaaattataagaaa-ttaa--tcaagagctcttcaaaagcaaacccaaatttc |
176 |
Q |
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||||||||||| || | |||||| ||| |||||||||| |||| ||||||||||||||| ||||||||| |||||| |
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| T |
32049698 |
atgagtctttacaaaagatacaaagaagttataagaaaattaacttcaagagctcttcaacagcaaaccctaatttc |
32049622 |
T |
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