View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9671_low_1 (Length: 525)
Name: NF9671_low_1
Description: NF9671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9671_low_1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 444; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 16 - 508
Target Start/End: Complemental strand, 34565742 - 34565251
Alignment:
| Q |
16 |
aactgccatatctatcccaagcttcagtcaatctccacacattgcaagtagaacactgtgatgttggagatatatctataatcggtaaggaacttaaaca |
115 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34565742 |
aactgccatatttatcccaagcttcagtcaatctccacacattgcaagtagaacactgtgatgttggagatatatctataatcggtaaggaacttaaaca |
34565643 |
T |
|
| Q |
116 |
cctagaagtcctaagttttgcacattctaatattaaagaactcccaattgaaataggaaatctgggcagtgtaagattattagatttgtcaaattgcaat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34565642 |
cctagaagtcctaagttttgcacattctaatattaaagaactcccaattgaaataggaaatctgggcagtgtaagattattagatttgtcaaattgcaat |
34565543 |
T |
|
| Q |
216 |
gatcttgacatcatttctgataatatcttgataagattgtctcggttggaagaactttactatagaatagacaattttccttggaaaagaaatgaagttg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34565542 |
gatcttgacatcatttctgataatatcttgataagattgtctcggttggaagaactttactatagaatagacaattttccttggaaaagaaatgaagttg |
34565443 |
T |
|
| Q |
316 |
cgctcaacgagttgnnnnnnntatctcatcagctaaaggttgttagagatgaaatttaggggggctgaaagtttagtcaaggatttggacttcaaaaact |
415 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34565442 |
cgctcaacgaattgaaaaaaatatctcatcagctaaaggttgtt-gagataaaatttaggggggctgaaagtttagtcaaggatttggacttcaaaaact |
34565344 |
T |
|
| Q |
416 |
tgcaaaagttttgggtttatgtggatccatacactgatcttcaacgatcttcatatttggactcaactttattgcaagttagtggtataggct |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34565343 |
tgcaaaagttttgggtttatgtggatccatacactgattttcaacgatctttatatttggactcaactttattgcaagttagtggtataggct |
34565251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 16 - 494
Target Start/End: Complemental strand, 34291254 - 34290777
Alignment:
| Q |
16 |
aactgccatatctatcccaagcttcagtcaatctccacacattgcaagtagaacactgtgatgttggagatatatctataatcggtaaggaacttaaaca |
115 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34291254 |
aactgccatatttatcccaagcttcactcaatctccacacgttgcaagtggaacattgtgatgttggagatatatctataattggtaaggaacttaaaca |
34291155 |
T |
|
| Q |
116 |
cctagaagtcctaagttttgcacattctaatattaaagaactcccaattgaaataggaaatctgggcagtgtaagattattagatttgtcaaattgcaat |
215 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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|
| T |
34291154 |
cctagaagtcctaagttttgcagattctaatattaaagagctcccatttgaaataggaaatctgggcagtctaagattattggatttgtcaaattgcaac |
34291055 |
T |
|
| Q |
216 |
gatcttgacatcatttctgataatatcttgataagattgtctcggttggaagaactttactatagaatagacaattttccttggaaaagaaatgaagttg |
315 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||| | |||||||| | |
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|
| T |
34291054 |
gatcttgtcatcatttctgataatgtcttgataagattgtctcggttggaagaaatttactttagaatggacaattttccttggaagaaaaatgaagctt |
34290955 |
T |
|
| Q |
316 |
cgctcaacgagttgnnnnnnntatctcatcagctaaaggttgttagagatgaaatttaggggggctgaaagtttagtcaaggatttggacttcaaaaact |
415 |
Q |
| |
|
| || ||||||||| ||||||||||||||||||||||| ||||||||| || | |||||||||| ||||||||||||||||| ||||| |||| |
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|
| T |
34290954 |
cactgaacgagttgaaaaagatatctcatcagctaaaggttgtt-gagatgaaagttggaggggctgaaattttagtcaaggatttggttttcaacaact |
34290856 |
T |
|
| Q |
416 |
tgcaaaagttttgggtttatgtggatccatacactgatcttcaacgatcttcatatttggactcaactttattgcaagt |
494 |
Q |
| |
|
|||||||||||||| |||||||||||| || | |||| |||| | ||| |||||||||| |||| |||||||||||| |
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|
| T |
34290855 |
tgcaaaagttttggatttatgtggatctttatagtgattttcagcactctgcatatttggagtcaaatttattgcaagt |
34290777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 72 - 494
Target Start/End: Complemental strand, 34554015 - 34553594
Alignment:
| Q |
72 |
tgtgatgttggagatatatctataatcggtaaggaacttaaacacctagaagtcctaagttttgcacattctaatattaaagaactcccaattgaaatag |
171 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||| ||||| ||||||||||| ||| ||||||||| |
|
|
| T |
34554015 |
tgtgatgttggagatatatctataattggtaaggaacttatacacctagaagtcttaagttttgcacactctaaaattaaagaacttccagttgaaatag |
34553916 |
T |
|
| Q |
172 |
gaaatctgggcagtgtaagattattagatttgtcaaattgcaatgatcttgacatcatttctgataatatcttgataagattgtctcggttggaagaact |
271 |
Q |
| |
|
|||| || ||| | |||||||||| |||||| ||||||||||||||||| | |||||||| |||| ||||||||||||||||||| ||||||||||| |
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|
| T |
34553915 |
gaaacttgagcattctaagattattggatttgacaaattgcaatgatcttaaagtcatttctactaatgtcttgataagattgtctcgattggaagaact |
34553816 |
T |
|
| Q |
272 |
ttactatagaatagacaattttccttggaaaagaaatgaagttgcgctcaacgagttgnnnnnnntatctcatcagctaaaggttgttagagatgaaatt |
371 |
Q |
| |
|
||| | || || ||||||||||||||| ||| ||||||| ||||| |||| |||||| ||||||||||||||||||||||| ||||||||| | |
|
|
| T |
34553815 |
ttatttaaggatggacaattttccttgggaaaaaaatgaaattgcgatcaatgagttgaaaaagatatctcatcagctaaaggttgtt-gagatgaaagt |
34553717 |
T |
|
| Q |
372 |
taggggggctgaaagtttagtcaaggatttggacttcaaaaacttgcaaaagttttgggtttatgtggatccatacactgatcttcaacgatcttcatat |
471 |
Q |
| |
|
|| ||| |||||| || ||||||||| ||| |||| | ||| | |||||||||||| |||||||||||| || | |||| |||| || ||| ||||| |
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|
| T |
34553716 |
cagagggactgaaatttcagtcaaggacttgaacttatacaacctacaaaagttttggatttatgtggatctttatagtgattttcagcgctctgcatat |
34553617 |
T |
|
| Q |
472 |
ttggactcaactttattgcaagt |
494 |
Q |
| |
|
||||| |||| |||||||||||| |
|
|
| T |
34553616 |
ttggagtcaaatttattgcaagt |
34553594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 72 - 169
Target Start/End: Original strand, 34372517 - 34372614
Alignment:
| Q |
72 |
tgtgatgttggagatatatctataatcggtaaggaacttaaacacctagaagtcctaagttttgcacattctaatattaaagaactcccaattgaaat |
169 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || | || | |||||| |||| || ||||| ||||||||||| ||||||| ||| ||||||| |
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|
| T |
34372517 |
tgtgatgttggagatatatctataattggtaaagagttaaataaactagaaatcctgagctttgccaattctaatattgaagaacttccacttgaaat |
34372614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 228; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 26 - 498
Target Start/End: Complemental strand, 15895422 - 15894951
Alignment:
| Q |
26 |
tctatcccaagcttcagtcaatctccacacattgcaagtagaacactgtgatgttggagatatatctataatcggtaaggaacttaaacacctagaagtc |
125 |
Q |
| |
|
|||||||||||| || ||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||| ||||| || ||||||||| |
|
|
| T |
15895422 |
tctatcccaagccccattcaatctccacacattgaaagtagaacattgtgatgttggagatatatctataattggtaagaaacttttacttctagaagtc |
15895323 |
T |
|
| Q |
126 |
ctaagttttgcacattctaatattaaagaactcccaattgaaataggaaatctgggcagtgtaagattattagatttgtcaaattgcaatgatcttgaca |
225 |
Q |
| |
|
|||||||| ||||||| ||| |||||||||||||||||||||||||| || |||||||| |||||||||| |||||| || |||||||||||| | |
|
|
| T |
15895322 |
ctaagtttgtcacattccaatgttaaagaactcccaattgaaataggagatttgggcagtctaagattattggatttgacaggttgcaatgatctgaatt |
15895223 |
T |
|
| Q |
226 |
tcatttctgataatatcttgataagattgtctcggttggaagaactttactatagaatagacaattttccttggaaaagaaatgaagttgcgctcaacga |
325 |
Q |
| |
|
|||||||||||||| ||||||| ||| ||| |||||||||||||||||||| ||| || |||||||||||||||| | ||||||||||||| ||||||| |
|
|
| T |
15895222 |
tcatttctgataatgtcttgattagactgtttcggttggaagaactttactttaggatgtacaattttccttggaataaaaatgaagttgcgatcaacga |
15895123 |
T |
|
| Q |
326 |
gttgnnnnnnntatctcatcagctaaaggttgttagagatgaaatttaggggggctgaaagtttagtcaaggatttggacttcaaaaacttgcaaaagtt |
425 |
Q |
| |
|
| || ||||||||||||||||||||||| |||||||||||||| || |||||| |||| |||||||||||| |||||| ||||| || ||||| |
|
|
| T |
15895122 |
gctgaaaaagatatctcatcagctaaaggttgtt-gagatgaaatttagaggtactgaaattttactcaaggatttggtcttcaacaacttacagaagtt |
15895024 |
T |
|
| Q |
426 |
ttgggtttatgtggatccatacactgatcttcaacgatcttcatatttggactcaactttattgcaagttagt |
498 |
Q |
| |
|
||||||||||||||||| |||| || || ||||| |||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
15895023 |
ttgggtttatgtggatcgatactctaattttcaaagatcttcatatttggagtcaaatttattgcaagttagt |
15894951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 157; Significance: 3e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 60 - 505
Target Start/End: Original strand, 130769 - 131213
Alignment:
| Q |
60 |
caagtagaacactgtgatgttggagatatatctataatcggtaaggaacttaaacacctagaagtcctaagttttgcacattctaatattaaagaactcc |
159 |
Q |
| |
|
||||||||| | ||||||||||| |||||||||||||| ||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
130769 |
caagtagaatattgtgatgttggtgatatatctataattggtaaggaacttacacacatagaagtcctaagttttgcacactctaatattaaagaacttc |
130868 |
T |
|
| Q |
160 |
caattgaaataggaaatctgggcagtgtaagattattagatttgtcaaattgcaatgatcttgacatcatttctgataatatcttgataagattgtctcg |
259 |
Q |
| |
|
|||||||||||||||| || ||| | ||||||||||||||||| ||||||||||||||||| | |||||||| |||| ||||||||||| ||||||| |
|
|
| T |
130869 |
caattgaaataggaaacttgagcattctaagattattagatttgacaaattgcaatgatcttaatgtcatttctagtaatgtcttgataagactgtctcg |
130968 |
T |
|
| Q |
260 |
gttggaagaactttactatagaatagacaattttccttggaaaagaaatgaagttgcgctcaacgagttgnnnnnnntatctcatcagctaaaggttgtt |
359 |
Q |
| |
|
|||||||||||||| | || || |||||||||||||||||| ||||||| ||||| |||||||||| ||||| |||||||||||| | || |
|
|
| T |
130969 |
attggaagaactttatttaaggatggacaattttccttggaaaggaaatgaggttgcaatcaacgagttaaaaaagatatcttatcagctaaagg-tctt |
131067 |
T |
|
| Q |
360 |
agagatgaaatttaggggggctgaaagtttagtcaaggatttggacttcaaaaacttgcaaaagttttgggtttatgtggatccatacactgatcttcaa |
459 |
Q |
| |
|
||||| ||| |||| ||| ||||| |||| |||||||||||||||| | || | |||||||||||| | ||||||||| || | |||| |||| |
|
|
| T |
131068 |
tgagataaaagttagagggactgaagttttaatcaaggatttggacttatacaatctacaaaagttttggatctatgtggatatttatagtgattttcag |
131167 |
T |
|
| Q |
460 |
cgatcttcatatttggactcaactttattgcaagttagtggtatag |
505 |
Q |
| |
|
|| ||| || |||| || |||| |||||||||| |||||| ||||| |
|
|
| T |
131168 |
cgctctgcacatttcgagtcaaatttattgcaaattagtgctatag |
131213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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