View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9671_low_17 (Length: 242)
Name: NF9671_low_17
Description: NF9671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9671_low_17 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 46496202 - 46496426
Alignment:
| Q |
18 |
actatcccaatgtataaaaaacctttatcacttgtaacgacgctaacttgccttttgcttgtttattttgttttcccttcaggcttttgattctaagaca |
117 |
Q |
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| T |
46496202 |
actatcccaatgtataaaaaacctttatcacttgtatcgacgctaacttgccttttgcttgtttattttgttttcccttcaggcttttgattctaagaca |
46496301 |
T |
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| Q |
118 |
aaaagcatcattcccttatttacttcctcgcacgaattattatttttccaatcaaaatttggttgggaaaatgagagaaattttgcaagggcatttaaga |
217 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
46496302 |
aaaagcatcattcccttatttacttcctcgtacgaattattattcttccaatcaaaatttgcttgggaaaatgagagaaaatttgcaagggcatttaaga |
46496401 |
T |
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| Q |
218 |
aatatctcgaatgaaatggattttt |
242 |
Q |
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||||||||||||||||||||||||| |
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| T |
46496402 |
aatatctcgaatgaaatggattttt |
46496426 |
T |
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