View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9671_low_2 (Length: 510)
Name: NF9671_low_2
Description: NF9671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9671_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 27283578 - 27283170
Alignment:
| Q |
1 |
tttacacatatttcgtaacaatcaatcagttcaataaaacactattactaaaaagcagcaacacattcgcatagcaccaaacactatttgactaacattc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27283578 |
tttacacatatttcgtaacaatcaatcagttcaataaaacactattactaaaaagcagcaacacattcgcatagcaccaaacactatttgactaacattc |
27283479 |
T |
|
| Q |
101 |
taagacctgtcaagcatgataattaaagacaaaactcaatagctttctttggggctatattttccaaaaccatccaaccataacgatcctggaacttgct |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27283478 |
taagacctgtcaagcatgataattaaagacaacactcaatagctttctttggggctatattttccaaaaccatccaaccataacgatcctggaacttgct |
27283379 |
T |
|
| Q |
201 |
catattctgacattatctctgcagtcatcaaaacatttgccttcacattagttaatcttttctctttctctatttcttcaatagcaaaacctgtatacca |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27283378 |
catattctgacattatctctgcagtcatcaaaacacttgccttcacattagttaaccttttatctttctctatttcttcaatagcaaaacctgtatacca |
27283279 |
T |
|
| Q |
301 |
cataaatgcataaagaacgaagcttgtttatgaagataaatgctatgacaa-aaaattattgggtaaccatcatatctagaaaacatatttgatgagatg |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27283278 |
cataaatgcataaagaacgaagcttgtttatgaagataaatgctatgacaaaaaaattattgggtaaccatcatatctagaaaacatatttgaatagatg |
27283179 |
T |
|
| Q |
400 |
agctagtaa |
408 |
Q |
| |
|
||||||||| |
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| T |
27283178 |
agctagtaa |
27283170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 424 - 492
Target Start/End: Complemental strand, 27283053 - 27282985
Alignment:
| Q |
424 |
tttgaccattgttgattaaccaaatggagtgttgagtcatttcctctatgtgtaatttgatgccatgcc |
492 |
Q |
| |
|
||||| |||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
27283053 |
tttgatcattgttgattaaccagatggagttttgagtcatttcctctatttgtaatttgatgccatgcc |
27282985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 4e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 39446809 - 39447053
Alignment:
| Q |
1 |
tttacacatatttcgtaacaatcaatcagttcaataaaacactatta--ctaaaaagcagcaacacattcgcatagcaccaaacactatttgactaacat |
98 |
Q |
| |
|
|||||||||||| | ||| ||||||||| |||||||| ||| | ||| ||| |||| ||||||||||| ||||||||||||||| |||||||||||||| |
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|
| T |
39446809 |
tttacacatattccctaataatcaatcatttcaataacacaatgttatactagaaagtagcaacacatttgcatagcaccaaacattatttgactaacat |
39446908 |
T |
|
| Q |
99 |
tctaagacctgtcaagcatgataattaaagacaaaactcaatagctttctttggggctatattttccaaaaccatccaaccataacgatcctggaacttg |
198 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||| | ||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||| |||| |
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| T |
39446909 |
tctaagacctgttaagcatgataattaacgacaacattcaatagctttcttt-gggctatattttccaaaatcttccaaccataacgatcctggagcttg |
39447007 |
T |
|
| Q |
199 |
ctcatattctgacattatctctgcagtcatcaaaacatttgccttc |
244 |
Q |
| |
|
||||||||||||||| ||| |||||||||| |||||| ||||||| |
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|
| T |
39447008 |
ctcatattctgacatcatcactgcagtcatgaaaacacatgccttc |
39447053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 275 - 414
Target Start/End: Original strand, 39447106 - 39447244
Alignment:
| Q |
275 |
tcttcaatagcaaaacctgtataccacataaatgcataaagaacgaagcttgtttatgaagataaatgctatgacaaaaaat---tattgggtaaccatc |
371 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||| |||||||| |
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| T |
39447106 |
tcttcaatagcaaaacctgtataccgcataaatgcataaagaca----cttgtttatgaagataaatgctatgaaaaaaaataattattggttaaccatc |
39447201 |
T |
|
| Q |
372 |
atatctagaaaacatatttgatgagatgagctagtaagtataa |
414 |
Q |
| |
|
| ||||||||||||||||||| |||| |||||||||||||||| |
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| T |
39447202 |
acatctagaaaacatatttgaagagaggagctagtaagtataa |
39447244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 246
Target Start/End: Complemental strand, 9775004 - 9774755
Alignment:
| Q |
4 |
acacatatttcgtaacaatcaatcagttcaataaaacactattactaaaaagc--agcaacacattcgcatagcaccaaacactatttgactaacattct |
101 |
Q |
| |
|
||||||||| | |||||||| |||| |||||||| |||||||||||| | || ||| ||||||| | |||||| ||| || |||||| || || ||| |
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|
| T |
9775004 |
acacatattccctaacaatctatcatttcaataacacactattactagagagtgtagctacacatttgtatagcaacaaccattatttgttta-cagtct |
9774906 |
T |
|
| Q |
102 |
aagacctgtcaagcatgataattaaagacaaaactcaatagctttctttggggctatattttccaaaaccatccaa-------ccataacgatcctggaa |
194 |
Q |
| |
|
| ||| | | ||||||||||||| |||| || | ||||||| |||||||||| ||||||||||| ||||| ||||| | |||||||||| || |
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| T |
9774905 |
acgacttcttaagcatgataattgaagataacattcaatagttttctttggg-ctatattttccgaaaccttccaagttccaactataacgatccatgag |
9774807 |
T |
|
| Q |
195 |
cttgctcatattctgacattatctctgcagtcatcaaaacatttgccttcac |
246 |
Q |
| |
|
||||||||||||||||||| ||| ||||| ||||||| ||| ||||||||| |
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|
| T |
9774806 |
cttgctcatattctgacatcatcactgcaatcatcaacacacatgccttcac |
9774755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 302
Target Start/End: Original strand, 11751520 - 11751584
Alignment:
| Q |
238 |
tgccttcacattagttaatcttttctctttctctatttcttcaatagcaaaacctgtataccaca |
302 |
Q |
| |
|
|||||||||||||| ||| |||||||||||| |||||||| ||| ||||| | ||||| |||||| |
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| T |
11751520 |
tgccttcacattagataaccttttctctttccctatttctgcaagagcaatatctgtagaccaca |
11751584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 297
Target Start/End: Original strand, 38211046 - 38211105
Alignment:
| Q |
238 |
tgccttcacattagttaatcttttctctttctctatttcttcaatagcaaaacctgtata |
297 |
Q |
| |
|
||||||||||| | ||| ||||||||| ||||||||||| ||||| ||||||||||||| |
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|
| T |
38211046 |
tgccttcacatcaaataaccttttctctgtctctatttctccaataacaaaacctgtata |
38211105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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