View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9671_low_7 (Length: 382)
Name: NF9671_low_7
Description: NF9671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9671_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 20 - 364
Target Start/End: Complemental strand, 44459578 - 44459234
Alignment:
| Q |
20 |
acagaagggcttgattctcttggtaggccaaacaatgagtaacttgtgatgaaatttagaatttgtgataacattatagtttgattttgctttcatagaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44459578 |
acagaagggcttgattctcttggtaggccaaacaatgagtaacttgtgatgaaatttagaatttgtgataacattatagtttgattttgctttcatagaa |
44459479 |
T |
|
| Q |
120 |
ataggaaaactacaaaaggtgcaaaggattgtatatggagattgttgattttagtaagtttatttcaagagttaagttaagtggtaagggggaggattct |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44459478 |
ataggaaaactacaaaaggtgcaaaggattgtatatggagattgttgattttagtaagtttatttcaagagttaagttaagtggtaagggggaggattct |
44459379 |
T |
|
| Q |
220 |
tgtacttaaaaaaccatgtgaaatattatttgcttttcccccttttagtttttatcttgagattttgctttgtataatcaatctcctctttaacttgctg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44459378 |
tgtacttaaaaaaccatgtgaaatattatttgcttttcccccctttagtttttatcttgagattttgctttgtataatcaatctcctctttaacttgctg |
44459279 |
T |
|
| Q |
320 |
catcctcattgtagttgattttgtttatgaatatctattagataa |
364 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44459278 |
catcctcattgtagttgattttgtttatgaatatctattagataa |
44459234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University