View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9672_high_2 (Length: 578)
Name: NF9672_high_2
Description: NF9672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9672_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 508; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 18 - 569
Target Start/End: Complemental strand, 15153381 - 15152830
Alignment:
| Q |
18 |
gaaccaaccatggtgccattgctgcttgttaaggagtgttggtgaccgtactgaaattttcatttttggctatgctggttcaattatcttcttgcttgct |
117 |
Q |
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| T |
15153381 |
gaaccaaccatggtgccattgctgcttgttaaggagtgttggtgaccgtactgaaattttcatttttggctatgctggttcaactatcttcttgcttgct |
15153282 |
T |
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| Q |
118 |
ccattactatttacatggggttaaagttgggttttagagatattgacattaaatttgattcaaaggttgcactgaatttgattcatggcgggtgtaatgt |
217 |
Q |
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| T |
15153281 |
ccattactatttacatggggttaaagttgagttttagagatattgacattaaatttgattcaaaggttgcactgaatttgattcttggcgggtgtaatgt |
15153182 |
T |
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| Q |
218 |
tagacgtccctcttatttgatggttcgtcacatccatgatattctcgcgtagctagatgtcttctatgtggatcatatttttcgtgaagctaactaagtt |
317 |
Q |
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| T |
15153181 |
tagacgtccctcttatttgatggttcgtcacatccatgatattctcgcgtagctagacgtcttctatgtggatcatatttttcgtgaagctaactaagtt |
15153082 |
T |
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| Q |
318 |
ccagttatggtgtagatgaacatttaaatttgaaaaataatttaatcgttatgggagggtagtttaggtatattgaaaataggctacacaaaaaatgaac |
417 |
Q |
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| T |
15153081 |
ccagttatagtgtagatgaaaatttaaatttgaaaaataatttaattgttatgggagggtaatttaggtatattgaaaataggctacacaaaaaatgaac |
15152982 |
T |
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| Q |
418 |
atttatcctctttattaatggtattgaaaataggccattggccatttcctcgacatctttgtttccgacatccttttctaagtgtatagaactccgacta |
517 |
Q |
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| T |
15152981 |
atttatcctctttattaatggtattgaaaataggccattggccatttcctcgacatctttgtttccgacatccttttctaagtgtatagaactccgactg |
15152882 |
T |
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| Q |
518 |
ggcttcgagaaagtcacctccgatggaaatatacctctttgtcatctctgct |
569 |
Q |
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| T |
15152881 |
ggcttcgagaaagtcgcctccgacggaaatatacctctttgtcatctctgct |
15152830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 152 - 313
Target Start/End: Complemental strand, 15148727 - 15148567
Alignment:
| Q |
152 |
tagagatattgacattaaatttgattcaaaggttgcactgaatttgattcatggcgggtgtaatgttagacgtccctcttatttgatggttcgtcacatc |
251 |
Q |
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| T |
15148727 |
tagagatattgatgttgaatctgattaaatggttgcattgaatttgattcttgatgggtctaatgtgagatatccctctaatttgatggttcgtcaaacc |
15148628 |
T |
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| Q |
252 |
catgatattctcgcgtagctagatgtcttctatgtggatcatatttttcgtgaagctaacta |
313 |
Q |
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| T |
15148627 |
cttgatattctcacgttgttggacgtctactat-tagatcatatttttcgtgaagctaacta |
15148567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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