View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9672_high_8 (Length: 266)

Name: NF9672_high_8
Description: NF9672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9672_high_8
NF9672_high_8
[»] chr3 (4 HSPs)
chr3 (16-207)||(1547597-1547787)
chr3 (34-207)||(52612882-52613054)
chr3 (28-208)||(42773815-42773994)
chr3 (34-190)||(31524698-31524853)
[»] chr7 (3 HSPs)
chr7 (16-207)||(39844873-39845063)
chr7 (28-146)||(22196949-22197067)
chr7 (28-146)||(22240754-22240872)
[»] chr6 (3 HSPs)
chr6 (28-195)||(14459318-14459484)
chr6 (28-146)||(20794294-20794412)
chr6 (81-138)||(2030995-2031052)
[»] chr5 (4 HSPs)
chr5 (31-140)||(1160453-1160562)
chr5 (14-194)||(2688373-2688551)
chr5 (37-186)||(10430270-10430418)
chr5 (107-147)||(9850737-9850777)
[»] chr2 (3 HSPs)
chr2 (34-195)||(38784786-38784946)
chr2 (78-207)||(4636816-4636944)
chr2 (25-116)||(36251064-36251155)
[»] chr4 (1 HSPs)
chr4 (201-242)||(49536614-49536655)
[»] chr8 (2 HSPs)
chr8 (25-138)||(5201285-5201398)
chr8 (158-194)||(27220356-27220392)
[»] chr1 (1 HSPs)
chr1 (201-242)||(38176930-38176971)


Alignment Details
Target: chr3 (Bit Score: 176; Significance: 7e-95; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 1547597 - 1547787
Alignment:
Q  16 gagacctcatcgcatctcttccttcattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgtcaccgaatt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1547597 gagacctcatcgcatctcttccttcattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgccaccgaatt 1547696  T
Q  116 taattattcattgggaatgttggagttgggggatctattaacaagaaaattcggaagggattgcgtatgatatgggaggtggtaatttgggt 207  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1547697 taattattcattgggaatgttggag-tgggggatctattaacaagaaaatttggaagggattgcgtatgatatgggaggtggtaatttgggt 1547787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 34 - 207
Target Start/End: Complemental strand, 52613054 - 52612882
Alignment:
Q  34 ttccttcattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgtcaccgaatttaattattcattgggaat 133  Q
    ||||||||||||||  | |  |||||||||||||| ||||||||||||||| | |||||||||||| ||||| | || |||||  | ||||||||||| |    
T  52613054 ttccttcattgtgatctcggaaggaatgtttggttaaatgtgatgttgtggctcgatttgaattttataatgccgccaaatttgttaattcattgggagt 52612955  T
Q  134 gttggagttgggggatctattaacaagaaaattcggaagggattgcgtatgatatgggaggtggtaatttgggt 207  Q
    ||||||| ||||||||  ||  | ||||| ||||||||||||||| | ||||| ||||||||||| ||||||||    
T  52612954 gttggag-tgggggattgatacataagaagattcggaagggattgaggatgatttgggaggtggtgatttgggt 52612882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 208
Target Start/End: Complemental strand, 42773994 - 42773815
Alignment:
Q  28 catctcttccttcattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgtcaccgaatttaattattcatt 127  Q
    |||||||| |||||||| ||  ||||  ||||| ||||||||| | ||||||  ||||| || ||| ||||||| ||| | || ||  |  |||||||||    
T  42773994 catctctttcttcattgcgatttggcgtggaatatttggttgagtttgatgtcttggttggacttgcattttgttatgcctccaaacctctttattcatt 42773895  T
Q  128 gggaatgttggagttgggggatctattaacaagaaaattcggaagggattgcgtatgatatgggaggtggtaatttgggta 208  Q
    |||| ||||||||| ||||||||| |||| |||||| | || || || ||||||||||| |||||||  || |||||||||    
T  42773894 gggagtgttggagt-gggggatctcttaagaagaaagtccgtaatggtttgcgtatgatttgggaggccgtgatttgggta 42773815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 190
Target Start/End: Original strand, 31524698 - 31524853
Alignment:
Q  34 ttccttcattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgtcaccgaatttaattattcattgggaat 133  Q
    ||||||||||||||| |||| |||||| ||||||| ||  | |||  |||| ||||||| |  ||||||||| | || |||||  |||| |||||||| |    
T  31524698 ttccttcattgtgacttggcaaggaatatttggttaaagctaatggagtggctagattttagctttgtaatgcctccaaatttgtttatccattgggagt 31524797  T
Q  134 gttggagttgggggatctattaacaagaaaattcggaagggattgcgtatgatatgg 190  Q
    |||||||| || ||| ||   || ||||||||||||||||| ||| | |||||||||    
T  31524798 gttggagt-ggtggaacttcgaataagaaaattcggaagggcttgagaatgatatgg 31524853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 39844873 - 39845063
Alignment:
Q  16 gagacctcatcgcatctcttccttcattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgtcaccgaatt 115  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39844873 gagacctcatcgcatctcttccttcattgtaacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgccaccgaatt 39844972  T
Q  116 taattattcattgggaatgttggagttgggggatctattaacaagaaaattcggaagggattgcgtatgatatgggaggtggtaatttgggt 207  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39844973 taattattcattgggaatgttggag-tgggggatctattaataagaaaattcggaagggattgcgtatgatatgggaggtggtaatttgggt 39845063  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 146
Target Start/End: Original strand, 22196949 - 22197067
Alignment:
Q  28 catctcttccttcattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgtcaccgaatttaattattcatt 127  Q
    ||||| ||||||||||||||  ||||  ||||||||||||||| | ||||||  || || |||||||||||| ||||| | |||||  |  |||| ||||    
T  22196949 catcttttccttcattgtgatttggcccggaatgtttggttgagtttgatgtcttgtttggatttgaattttataatgcctccgaacctttttatccatt 22197048  T
Q  128 gggaatgttggagttgggg 146  Q
    || | ||||||||| ||||    
T  22197049 ggaagtgttggagtggggg 22197067  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 146
Target Start/End: Complemental strand, 22240872 - 22240754
Alignment:
Q  28 catctcttccttcattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgtcaccgaatttaattattcatt 127  Q
    ||||| ||||||||||||||  ||||  ||||||||||||||| | ||||||  || || |||||||||||| ||||| | |||||  |  |||| ||||    
T  22240872 catcttttccttcattgtgatttggcccggaatgtttggttgagtttgatgtcttgtttggatttgaattttataatgcctccgaacctttttatccatt 22240773  T
Q  128 gggaatgttggagttgggg 146  Q
    || | ||||||||| ||||    
T  22240772 ggaagtgttggagtggggg 22240754  T

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Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 28 - 195
Target Start/End: Original strand, 14459318 - 14459484
Alignment:
Q  28 catctcttccttcattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgtcaccgaatttaattattcatt 127  Q
    ||||| || |||||||| ||| |||| | |||||| |||||  || |||||   |||||||||||||||||||| ||| | ||||||||  |||| ||||    
T  14459318 catctttttcttcattgcgacttggcaaagaatgtgtggttacatttgatgacttggttagatttgaattttgttatgccgccgaatttgtttatccatt 14459417  T
Q  128 gggaatgttggagttgggggatctattaacaagaaaattcggaagggattgcgtatgatatgggaggt 195  Q
    |||||||||||||   ||||||| ||| | ||||| ||||||||||| ||||| ||||||||||||||    
T  14459418 gggaatgttggag-caggggatcaattcataagaagattcggaagggcttgcggatgatatgggaggt 14459484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 146
Target Start/End: Original strand, 20794294 - 20794412
Alignment:
Q  28 catctcttccttcattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgtcaccgaatttaattattcatt 127  Q
    ||||||||||||||||||||  ||||  ||||||||||||||| | ||||||  ||||| |||||||||||| ||||| |  ||||  |  |||| ||||    
T  20794294 catctcttccttcattgtgatttggcccggaatgtttggttgagtttgatgtcttggttggatttgaattttataatgccttcgaacctttttatccatt 20794393  T
Q  128 gggaatgttggagttgggg 146  Q
    |||| ||||||||| ||||    
T  20794394 gggagtgttggagtggggg 20794412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 2031052 - 2030995
Alignment:
Q  81 gtggttagatttgaattttgtaatgtcaccgaatttaattattcattgggaatgttgg 138  Q
    |||||| |||||||||||||||||| |||| |||||| |||| |||||||| ||||||    
T  2031052 gtggttggatttgaattttgtaatgccacccaatttatttatccattgggagtgttgg 2030995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 140
Target Start/End: Original strand, 1160453 - 1160562
Alignment:
Q  31 ctcttccttcattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgtcaccgaatttaattattcattggg 130  Q
    ||||||||||||| |||| | || |||||||||||||||||| ||||| ||||| |  ||||||| ||||||||| | || |||||  ||||||||||||    
T  1160453 ctcttccttcattttgactttgcaaggaatgtttggttgaatttgatgatgtggcttaatttgaactttgtaatgccgccaaatttgtttattcattggg 1160552  T
Q  131 aatgttggag 140  Q
    ||||||||||    
T  1160553 aatgttggag 1160562  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 194
Target Start/End: Complemental strand, 2688551 - 2688373
Alignment:
Q  14 cagagacctcatcgcatctcttccttcattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgtcaccgaa 113  Q
    |||||||| | || ||||| || || ||||||||  ||||| ||||||||||||||| |  |||||  ||||| |||||| ||||| ||||| | || ||    
T  2688551 cagagaccacctctcatctttttctccattgtgatttggctcggaatgtttggttgacttcgatgtcttggttggatttgcattttataatgcccccaaa 2688452  T
Q  114 tttaattattcattgggaatgttggagttgggggatctattaacaagaaaattcggaagggattgcgtatgatatgggagg 194  Q
     ||| | || |||||||| |||||||||  ||||| |  | || |||||||| ||||| || ||||| ||||| |||||||    
T  2688451 cttattcatccattgggagtgttggagt--ggggaccactaaataagaaaatccggaatggcttgcggatgatttgggagg 2688373  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 186
Target Start/End: Original strand, 10430270 - 10430418
Alignment:
Q  37 cttcattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgtcaccgaatttaattattcattgggaatgtt 136  Q
    |||||||| ||  ||||||||| ||||||||||||  | |||  |||||| || ||||| ||| | ||| | || |||||  ||||||||||||||||||    
T  10430270 cttcattgcgatttggctaggagtgtttggttgaagcttatggggtggttggacttgaactttatcatgcccccaaatttgtttattcattgggaatgtt 10430369  T
Q  137 ggagttgggggatctattaacaagaaaattcggaagggattgcgtatgat 186  Q
    |||| ||  |||   || |||||||||||| |||| || |||||||||||    
T  10430370 ggag-tgccggagtcatgaacaagaaaattaggaaaggtttgcgtatgat 10430418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 9850777 - 9850737
Alignment:
Q  107 caccgaatttaattattcattgggaatgttggagttggggg 147  Q
    |||| |||||| ||||||||||||||||||||||| |||||    
T  9850777 caccaaatttatttattcattgggaatgttggagtgggggg 9850737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 195
Target Start/End: Original strand, 38784786 - 38784946
Alignment:
Q  34 ttccttcattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgtcaccgaatttaattattcattgggaat 133  Q
    ||||| ||||||||| |||| |||||||||||| | ||| |||||    |||||||||||   ||| | ||| | || |||||  |||||||| || |||    
T  38784786 ttcctacattgtgacttggcgaggaatgtttggcttaatttgatgactaggttagatttggtgtttattatgcctcctaatttgtttattcatcggaaat 38784885  T
Q  134 gttggagttgggggatctattaacaagaaaattcggaagggattgcgtatgatatgggaggt 195  Q
    |||||||| ||||||| | | ||||||||||||||||| |||||||||||||||||||||||    
T  38784886 gttggagt-gggggatttttcaacaagaaaattcggaaaggattgcgtatgatatgggaggt 38784946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 207
Target Start/End: Complemental strand, 4636944 - 4636816
Alignment:
Q  78 gttgtggttagatttgaattttgtaatgtcaccgaatttaattattcattgggaatgttggagttgggggatctatta-acaagaaaattcggaagggat 176  Q
    ||||||| | |||||||||||||||||| | || |||||  ||||||||||||| ||||||||| |||||  | |||| | ||||| ||||| |||  ||    
T  4636944 gttgtggctcgatttgaattttgtaatgccgcctaatttgtttattcattgggagtgttggagtgggggg--ccattacataagaagattcgaaagctat 4636847  T
Q  177 tgcgtatgatatgggaggtggtaatttgggt 207  Q
    || | ||||| ||||||||||||||||||||    
T  4636846 tgaggatgatttgggaggtggtaatttgggt 4636816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 116
Target Start/End: Original strand, 36251064 - 36251155
Alignment:
Q  25 tcgcatctcttccttcattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgtcaccgaattt 116  Q
    |||||||| || |||| |||||| ||||| | |||| ||||||| ||  | |||||||||||||||||||||||||||||| |||| |||||    
T  36251064 tcgcatctttttcttccttgtgatatggcgaagaatatttggttaaacttaatgttgtggttagatttgaattttgtaatgccaccaaattt 36251155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 49536655 - 49536614
Alignment:
Q  201 tttgggtacacttggttttgatgcttatgctgaaccaatgag 242  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  49536655 tttgggtacacttggttttgatgattatgctgaaccaatgag 49536614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 138
Target Start/End: Complemental strand, 5201398 - 5201285
Alignment:
Q  25 tcgcatctcttccttcattgtgacatggctaggaatgtttggttgaatgtgatgttgtggttagatttgaattttgtaatgtcaccgaatttaattattc 124  Q
    |||||| | ||||| ||||| || |||||||| ||| ||||| | ||  ||||| ||||||| |||||||||||||||||| |||| || ||| |  | |    
T  5201398 tcgcatattttcctccattgcgatatggctagaaatatttggcttaacttgatggtgtggttggatttgaattttgtaatgccacccaacttattcgtcc 5201299  T
Q  125 attgggaatgttgg 138  Q
    ||||||||||||||    
T  5201298 attgggaatgttgg 5201285  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 27220356 - 27220392
Alignment:
Q  158 aagaaaattcggaagggattgcgtatgatatgggagg 194  Q
    |||||||| |||||||| |||||||||||||||||||    
T  27220356 aagaaaatccggaagggtttgcgtatgatatgggagg 27220392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 38176971 - 38176930
Alignment:
Q  201 tttgggtacacttggttttgatgcttatgctgaaccaatgag 242  Q
    |||||| |||||||||||||||| ||||||| ||||||||||    
T  38176971 tttggggacacttggttttgatgattatgcttaaccaatgag 38176930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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