View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9672_low_1 (Length: 583)
Name: NF9672_low_1
Description: NF9672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9672_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 248 - 333
Target Start/End: Complemental strand, 487676 - 487591
Alignment:
| Q |
248 |
tttcaaacaaatatattaagataacgtaagaaggaagccaaaaacatttttctaacaccttattttatcattcagctaaatacgaa |
333 |
Q |
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| T |
487676 |
tttcaaacaaatatattaagataacgtaagaaggaagtcaaaaacatttttctaacaccttattttatcattcagctaaatacgaa |
487591 |
T |
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Target: chr6; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 453 - 537
Target Start/End: Complemental strand, 487543 - 487459
Alignment:
| Q |
453 |
ctaaatatatttaactaaactttttatagaaaaagaattcgaacaaaacattatttgtctcctatatttgttaaaaattaggaca |
537 |
Q |
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| T |
487543 |
ctaaatatatttacctaaactttttatagaaaaagaattcgaacaaaacattatttgtctcctatatttgttaaaaattaggaca |
487459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 487985 - 487881
Alignment:
| Q |
10 |
agagacaaatcaacacaaatgagggaaaagtactagt--------acaatttttgtaatttaaaaaggaacagataacgtgccgaccaaaagagtcaaaa |
101 |
Q |
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| T |
487985 |
agagacaaatcaacacaaatgagggaaaagtagtaggctaggagcacaatttttagaatttaaaaagaaacagataacgtgccgaccaaaatagtcaaaa |
487886 |
T |
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| Q |
102 |
taatt |
106 |
Q |
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| T |
487885 |
taatt |
487881 |
T |
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