View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9672_low_11 (Length: 329)
Name: NF9672_low_11
Description: NF9672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9672_low_11 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 43300965 - 43300637
Alignment:
| Q |
1 |
aagtgaactgagattggagtttgaaacctaagagcggtggtgagatgttacgggttcagagcgtggtgttgaactgtagaagaaaacgagaacgaggaag |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43300965 |
aagtgaactgagactggagtttgaaacctaagagcggtggtgagatgttacgggttcagagcgtggtgttgaactgtagaagaaaacgagaacgaggaag |
43300866 |
T |
|
| Q |
101 |
aaagaaggtgctagaacaaatatgcagaaatggttacggtgggacttagggtagagtattcaattctcattggacaggcccagagtaatgagctgggctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
43300865 |
aaagaaggtgctagaacaaatatgcagaaatggttacggtgggacttagggtagagtattcaattctcattggacaggcccaaagtaatcagctgggctt |
43300766 |
T |
|
| Q |
201 |
cactccctactattttattgaaatttctccccccacctcccccacacctaaaaaataggaaagagtcgtaagatgaaatgctaattttcatttcatttta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
43300765 |
cactccctactattttattgaaatttctccccccacctcccccacaccaaaaaaataggaaagagtcgtaatataaaatgctaattttcatttcatttta |
43300666 |
T |
|
| Q |
301 |
tttttaacagcttaaccaatgcacctaac |
329 |
Q |
| |
|
|||||||||||| |||||||||||||||| |
|
|
| T |
43300665 |
tttttaacagctcaaccaatgcacctaac |
43300637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University