View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9672_low_14 (Length: 279)
Name: NF9672_low_14
Description: NF9672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9672_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 14 - 266
Target Start/End: Original strand, 49609674 - 49609926
Alignment:
| Q |
14 |
agatagttccgtcgacattgggaatctctaaggcctgaaaagcgtaaagggatgaaagatattaaagaaacaaaagaaaacaagagtagtggaatcgtgg |
113 |
Q |
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| T |
49609674 |
agatagtttcgtcgacattgggaatctctaaggcctgaaaagcgtaaagggatgaaagatattaaagaaacaaaagaaaacaagagtagtggactcgtgg |
49609773 |
T |
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| Q |
114 |
tatgaataaatgagacaggggttacccagatacgattttcttcggcacgaaaagcacaaaagaaagcaaggagatgcacaaaaatgttggcaagtgaaaa |
213 |
Q |
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| T |
49609774 |
tatgaataaatgagacaggggttacccagatacgattttcttcgccacgaaaagcacaaaagaaagcaaggagatgcacaaaaatgttggcaagtgaaaa |
49609873 |
T |
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| Q |
214 |
tgatatagaaaaagccatgatttatcagacttgttgcagactaggtatttttt |
266 |
Q |
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| T |
49609874 |
tgatatagaaaaagccatgatttatcagacttgttgcagactaggtatttttt |
49609926 |
T |
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