View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9672_low_18 (Length: 256)
Name: NF9672_low_18
Description: NF9672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9672_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 15 - 139
Target Start/End: Original strand, 54867481 - 54867602
Alignment:
| Q |
15 |
cagagaccaaagttgaagaaaaagatcaagaaggtgaaaagaaacacaccagcctcttggagaaacttcaccgatctgatagttcttcaagctctgtaag |
114 |
Q |
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| T |
54867481 |
cagagaccaaagttgaagaaaaaga---agaaggtgaaaagaaacacaccagcctcttggagaaacttcaccgatctgatagctcttcaagctctgtaag |
54867577 |
T |
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| Q |
115 |
tagtaaaattcagtcattctgtctt |
139 |
Q |
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| T |
54867578 |
tagtaaaattcagtcattctgtctt |
54867602 |
T |
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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 193 - 238
Target Start/End: Original strand, 54867680 - 54867724
Alignment:
| Q |
193 |
atgcatgtaatagtcgagcgaggaggaagttgatggagagaagagg |
238 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
54867680 |
atgcatgta-tagtcgagcgaggaggaagttgatggagagaagagg |
54867724 |
T |
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