View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9672_low_20 (Length: 254)
Name: NF9672_low_20
Description: NF9672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9672_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 40036152 - 40036382
Alignment:
| Q |
18 |
aacttactctgcagcttttgttcccagaactgacttctag----atcgacggtggcaggaccgtttcttttttgtttgtatgctatgaatattatgtcta |
113 |
Q |
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| T |
40036152 |
aacttacttcgcagcttttgttcccagaactgacttctagctagatcgacggtggcaggaccgtttcttttttgtttgtatgctatgaatattatgtcta |
40036251 |
T |
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| Q |
114 |
gtgtgaatacttggattatctaagcagcaagtttatggacctggtgattatcttttgaatattaactatctatctgtgtgtttattccttgctagaaagt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40036252 |
gtgtgaatacttggattatctaagcagcaagtttatggacctggtgattatcttttgaatattaactatctatctgtgtgtttattccttgctagaaagt |
40036351 |
T |
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| Q |
214 |
tttgaagtttttgctgggtcaagtatctctg |
244 |
Q |
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| T |
40036352 |
tctgaagtttttgttgggtcaagtatctctg |
40036382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 28 - 202
Target Start/End: Original strand, 7892189 - 7892363
Alignment:
| Q |
28 |
gcagcttttgttcccagaactgacttctagatcgacggtggcaggaccgtttcttttttgtttgtatgctatgaatattatgtctagtgtgaatacttgg |
127 |
Q |
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|||||||||||||| ||||||| ||||||||||| |||||||||| || |||||||||||||| |||||||||| |||| |||||||||||||||||||| |
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| T |
7892189 |
gcagcttttgttcctagaactggcttctagatcggcggtggcaggtccatttcttttttgtttttatgctatgattattgtgtctagtgtgaatacttgg |
7892288 |
T |
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| Q |
128 |
attatctaagcagcaagtttatggacctggtgattatcttttgaatattaactatctatctgtgtgtttattcct |
202 |
Q |
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| T |
7892289 |
attttgtaagcagaaagtttccaggcctgctgcttttcttttaaatgtcaactatttatttgcgtgtttattcct |
7892363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 29 - 234
Target Start/End: Original strand, 38139036 - 38139236
Alignment:
| Q |
29 |
cagcttttgttcccagaactgacttctagatcgacggtggcaggaccgtttcttttttgtttgtatgctatgaatattatgtctagtgtgaatacttgga |
128 |
Q |
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||||||||||||| ||||||| ||||||||| || ||||||||| |||||||||||| |||| |||||||||| || | ||||| |||||||||||| || |
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| T |
38139036 |
cagcttttgttccaagaactggcttctagattgatggtggcagg-ccgtttctttttcgtttttatgctatgattactgtgtcttgtgtgaatactt-ga |
38139133 |
T |
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| Q |
129 |
ttatctaagcagcaagtttatggacctggtgattatcttttgaatattaactatctatctgtgtgtttattccttgctagaaagttttgaagtttttgct |
228 |
Q |
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|| | |||||||||| ||| ||||||| ||||| |||||||||||| |||||| || | ||||||||||||||| | | ||||| ||||||||||| |
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| T |
38139134 |
ttttgtaagcagcaaatttccggacctgctgattttcttttgaatatcaactattta--tttgtgtttattccttgttgtgatgtttt-aagtttttgct |
38139230 |
T |
|
| Q |
229 |
gggtca |
234 |
Q |
| |
|
|||||| |
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| T |
38139231 |
gggtca |
38139236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 162
Target Start/End: Original strand, 32574592 - 32574651
Alignment:
| Q |
103 |
tattatgtctagtgtgaatacttggattatctaagcagcaagtttatggacctggtgatt |
162 |
Q |
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| T |
32574592 |
tattgtgtctagcgtgaatacttggattttgtaagcagcaagtttctggacctgttgatt |
32574651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 199
Target Start/End: Original strand, 45984954 - 45985045
Alignment:
| Q |
108 |
tgtctagtgtgaatacttggattatctaagcagcaagtttatggacctggtgattatcttttgaatattaactatctatctgtgtgtttatt |
199 |
Q |
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||||||||||||| ||||||||| | |||||| ||||| |||||||| ||||| | |||||||||| |||| | ||| |||||||||||| |
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| T |
45984954 |
tgtctagtgtgaacacttggattttgctagcagcgagtttctggacctgctgattttgttttgaatatcaactctttatttgtgtgtttatt |
45985045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 43044094 - 43043985
Alignment:
| Q |
30 |
agcttttgttcccagaactgacttctagatcgacggtggcaggaccgtttcttttttgtttgtatgctatgaatattatgtctagtgtgaatacttggat |
129 |
Q |
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||||| ||||| |||||||| |||||||||||||||||||| || | ||| |||||||| |||||| | | | || |||||||| |||| |||||||| |
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| T |
43044094 |
agcttgtgttctcagaactgggttctagatcgacggtggcagtactatatctgttttgtttttatgctttaattgttgtgtctagtctgaacacttggat |
43043995 |
T |
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| Q |
130 |
tatctaagca |
139 |
Q |
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| | |||||| |
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| T |
43043994 |
tttgtaagca |
43043985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 43067897 - 43067938
Alignment:
| Q |
30 |
agcttttgttcccagaactgacttctagatcgacggtggcag |
71 |
Q |
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||||||||||| |||||||| |||||||||||||||||||| |
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| T |
43067897 |
agcttttgttctcagaactgggttctagatcgacggtggcag |
43067938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 43082938 - 43082897
Alignment:
| Q |
30 |
agcttttgttcccagaactgacttctagatcgacggtggcag |
71 |
Q |
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||||||||||| |||||||| |||||||||||||||||||| |
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| T |
43082938 |
agcttttgttctcagaactgggttctagatcgacggtggcag |
43082897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 19965639 - 19965713
Alignment:
| Q |
27 |
tgcagcttttgttcccagaactgacttctagatcgacggtggcaggaccgtttcttttttgtttgtatgctatga |
101 |
Q |
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| T |
19965639 |
tgcagctttcgttcccagaactggcttctagatcgacagtggcagggccatttctttttggtttttatgctatga |
19965713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 4230566 - 4230525
Alignment:
| Q |
29 |
cagcttttgttcccagaactgacttctagatcgacggtggca |
70 |
Q |
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| T |
4230566 |
cagcttttgttcccagaactgggttctagatcgacggtggca |
4230525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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