View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9672_low_22 (Length: 247)
Name: NF9672_low_22
Description: NF9672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9672_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 43300277 - 43300047
Alignment:
| Q |
1 |
tacttctccatattgctcaagaaactgaaatccgagagacatgcaagacaaaagtgagactactaaatttaaaatagcctacaccagtaaaatcagaatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43300277 |
tacttctccatattgctcaagaaactgaaatccgagagacatgcaagacaaaagtgagactactaaatttaaaatagcctacaccagtaaaatgagaatg |
43300178 |
T |
|
| Q |
101 |
acacaacaaaaatgcatcccaaaaacatagaaaatgtaaaggtaccatacatgatacttttagtaaatgatcaattcatcaatttttccaacattcctca |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43300177 |
acacaacaaaaatgcatcctaaaaacatagaaaatgtaaaggtaccatacatgatacttttagtaaatgatcaattcatcaatttttccaacattcctca |
43300078 |
T |
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| Q |
201 |
agtacattggtaggaaatttcagcaaaaatc |
231 |
Q |
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|||||||||||||||||||| |||||||||| |
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| T |
43300077 |
agtacattggtaggaaattttagcaaaaatc |
43300047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 2 - 231
Target Start/End: Complemental strand, 27647230 - 27646999
Alignment:
| Q |
2 |
acttctccatattgctcaagaaactgaaatccgagagacatgcaagacaaaagtgagactacta--aatttaaaatagcctacaccagtaaaatcagaat |
99 |
Q |
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|||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||| ||||| ||| ||||||||||| || |||||||| ||||| |
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| T |
27647230 |
acttctccatattgctcaagaaactgaaatccaagatatatgcaagacaaaagtgagaatactataaatctaaaatagcctctactagtaaaatgagaat |
27647131 |
T |
|
| Q |
100 |
tacacaacaaaaatgcatcccaaaaacatagaaaatgtaaaggtaccatacatgatacttttagtaaatgatcaattcatcaatttttccaacattcctc |
199 |
Q |
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|||| |||||||| ||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
27647130 |
tacataacaaaaaagcatcccaaaaacatagaaaatgaaaaggcgctatacatgatacttttagtaaatgatcaattcgtcaatttttccaacattcctc |
27647031 |
T |
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| Q |
200 |
aagtacattggtaggaaatttcagcaaaaatc |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
27647030 |
gagtacattggtaggaaatttcagcaaaaatc |
27646999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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